HHsearch alignment for GI: 254780487 and conserved domain: TIGR02173
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=95.57 E-value=0.015 Score=35.31 Aligned_cols=101 Identities=21% Similarity=0.263 Sum_probs=58.3
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHC-CCCCCCCCCCCCCCCCHHHHHHHHHHHC-
Q ss_conf 29998358987479999999999840486120138873806899999855-7873114430014510347889998502-
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGR-IPKSHIIPEKWKLRTPASPHLAAEIDGV- 81 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 81 (217)
T Consensus 2 ~I~ISGp-PGSGktTvA~~lA~~Ls---l~~iSaG~--------iRelA~~~Gldl~E------------~~~a-ee~~e 56 (173)
T TIGR02173 2 IITISGP-PGSGKTTVAKILAEKLS---LKLISAGD--------IRELAEKMGLDLAE------------SKYA-EENPE 56 (173)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHCC---CCEECCCH--------HHHHHHHCCCCHHH------------HHHH-CCCCC
T ss_conf 7887358-96864789999998639---83120200--------78898642988777------------3443-05863
Q ss_pred ---CCHHHHHHHHHHCCEEEEEC-CCCCCCCCCCCCCHHHHHHHHCCCEEEEEC
Q ss_conf ---35078864223288799922-765556676753089999974794489705
Q gi|254780487|r 82 ---IIDPATINPPDINDSIIIEG-IGGLLVPLTTEYLFIDLIERWQFPIILCAR 131 (217)
Q Consensus 82 ---~i~~~~~~~~~~~D~viIEG-agg~~~~~~~~~~~~dla~~l~~~vILV~~ 131 (217)
T Consensus 57 IDk~iD~~~~E~A~~~~nvvlEsrlagW~~~~--nG~yaD~~iyL~A~levRA~ 108 (173)
T TIGR02173 57 IDKKIDRRIREIAEKEKNVVLESRLAGWILKK--NGEYADVKIYLKAPLEVRAR 108 (173)
T ss_pred CCHHHHHHHHHHHCCCCCEEEEEHHHHHHCCC--CCCCCCEEEEECCCHHHHHH
T ss_conf 11675378855430489668852054331157--88967567886088333243