HHsearch alignment for GI: 254780487 and conserved domain: TIGR02759

>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD; InterPro: IPR014128 The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM) , .; GO: 0000746 conjugation.

Probab=93.26  E-value=0.1  Score=30.22  Aligned_cols=32  Identities=25%  Similarity=0.299  Sum_probs=27.9

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf             329998358987479999999999840486120
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPI   35 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv   35 (217)
T Consensus       209 Qh~L~~GT-tG~GKs~~lr~LL~~iR~rGd~AI  240 (613)
T TIGR02759       209 QHILIHGT-TGSGKSVALRKLLRWIRQRGDRAI  240 (613)
T ss_pred             CCEEEECC-CCCHHHHHHHHHHHHHHHCCCEEE
T ss_conf             25266454-174389999999999986398589