HHsearch alignment for GI: 254780487 and conserved domain: TIGR02768
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA; InterPro: IPR014136 This entry represents the Ti-type conjugative transfer relaxase TraA. TraA contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, IPR005053 from INTERPRO) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, IPR014129 from INTERPRO). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer ..
Probab=92.02 E-value=0.69 Score=24.98 Aligned_cols=107 Identities=22% Similarity=0.252 Sum_probs=61.0
Q ss_pred EECCCCCCCHHHHHHHHHHHHHCCCCCCEE---CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 983589874799999999998404861201---38873806899999855787311443001451034788999850235
Q gi|254780487|r 7 IVGTDTSVGKTIFASALVHALNAYYWKPIQ---SGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII 83 (217)
Q Consensus 7 I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~---~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 83 (217)
T Consensus 435 VvG~-AGtGKSt~L~aAR~AWe~~Gy~V~GAALsGK----AAegLe~~sGI~S----------RTLASle~aW~~G~d~L 499 (888)
T TIGR02768 435 VVGR-AGTGKSTMLKAAREAWEAAGYRVIGAALSGK----AAEGLEAESGIES----------RTLASLEYAWANGRDLL 499 (888)
T ss_pred EECC-CCCCHHHHHHHHHHHHHHCCCEEEEHHHHHH----HHHHHHCCCCCCH----------HHHHHHHHHHHCCCCCC
T ss_conf 9748-9987667899999999873977871545558----9887300268750----------47887999987387522
Q ss_pred HHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECC-CCCHHH
Q ss_conf 0788642232887999227655566767530899999747944897057-765045
Q gi|254780487|r 84 DPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCART-SLGTIN 138 (217)
Q Consensus 84 ~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~-~~g~i~ 138 (217)
T Consensus 500 --------~~~dvLviDEAG--MV~S~Qm~r~l~~A~~AGaKvVLvGD~~QLqaI~ 545 (888)
T TIGR02768 500 --------EDKDVLVIDEAG--MVGSRQMARVLKEAEEAGAKVVLVGDPEQLQAIE 545 (888)
T ss_pred --------CCCCEEEEECCC--CHHHHHHHHHHHHHHHCCCCEEEECCHHHHCHHH
T ss_conf --------477668985154--4146778899999987276059848857824424