HHsearch alignment for GI: 254780487 and conserved domain: TIGR03499
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.44 E-value=0.0049 Score=38.43 Aligned_cols=72 Identities=19% Similarity=0.157 Sum_probs=35.8
Q ss_pred EEEEECCCCC-HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHH---HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 4897057765-0457999999998479907999976977800599---99986199899994788888887999999971
Q gi|254780487|r 126 IILCARTSLG-TINHSLLSLETLRNRNINIIGIAFIGDSMPKVEE---TIVKIGRIPHLGRLPKIDPIDPDVLHQKFQEH 201 (217)
Q Consensus 126 vILV~~~~~g-~i~~~~l~~~~~~~~g~~i~GiIlN~~~~~~~~~---~le~~~~ipvLG~iP~~~~~~~~~l~~~~~~~ 201 (217)
T Consensus 197 i~lvGPTGVGKTTTiAKLAa~~~l~~~~~~V~lIT~DtyRigA~eQLk~ya~il~vp~~vv------~~~~~l~~~l~~~ 270 (282)
T TIGR03499 197 IALVGPTGVGKTTTLAKLAARFVLEHGKKKVALITTDTYRIGAVEQLKTYAKILGVPVKVA------RDPKELAKALERL 270 (282)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCEEEEE------CCHHHHHHHHHHC
T ss_conf 9997788875788999999999997389967999807776789999999999959748993------9999999999865
Q ss_pred HH
Q ss_conf 33
Q gi|254780487|r 202 FT 203 (217)
Q Consensus 202 ~~ 203 (217)
T Consensus 271 ~~ 272 (282)
T TIGR03499 271 RD 272 (282)
T ss_pred CC
T ss_conf 79