HHsearch alignment for GI: 254780487 and conserved domain: cd00544
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=91.13 E-value=0.82 Score=24.51 Aligned_cols=128 Identities=22% Similarity=0.330 Sum_probs=63.3
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHH-CCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHH-HHHHHHHHCC
Q ss_conf 999835898747999999999984-04861201388738068999998557873114430014510347-8899985023
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALN-AYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASP-HLAAEIDGVI 82 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~-~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 82 (217)
T Consensus 2 iLVtGG-~rSGKS~~AE~la~~~~~~~~Y--iAT~~~~D--~Em~~RI~~Hr~~R--~~~w--~TiE~~~~l~~------ 66 (169)
T cd00544 2 ILVTGG-ARSGKSRFAERLAAELGGPVTY--IATAEAFD--DEMAERIARHRKRR--PAHW--RTIETPRDLVS------ 66 (169)
T ss_pred EEEECC-CCCCHHHHHHHHHHHCCCCCEE--EECCCCCC--HHHHHHHHHHHHCC--CCCC--EEEECCCCHHH------
T ss_conf 899778-6636899999999845998199--97889889--89999999999668--9996--69963443999------
Q ss_pred CHHHHHHHHHHCCEEEEECCCCCCCCCCCCC------C-------HHHHHHHHCCCEEEEEC-CCCCHHHHHHHHHHHHH
Q ss_conf 5078864223288799922765556676753------0-------89999974794489705-77650457999999998
Q gi|254780487|r 83 IDPATINPPDINDSIIIEGIGGLLVPLTTEY------L-------FIDLIERWQFPIILCAR-TSLGTINHSLLSLETLR 148 (217)
Q Consensus 83 i~~~~~~~~~~~D~viIEGagg~~~~~~~~~------~-------~~dla~~l~~~vILV~~-~~~g~i~~~~l~~~~~~ 148 (217)
T Consensus 67 ---~l~~-~~~~~~vLiDclt~wl~N~l~~~~~~~~~~~~~~i~~l~~~l~~~~~~~ViVSnEVG~givp~~~~~R~f~d 142 (169)
T cd00544 67 ---ALKE-LDPGDVVLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRNKPGTLILVSNEVGLGVVPENALGRRFRD 142 (169)
T ss_pred ---HHHH-CCCCCEEEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHH
T ss_conf ---9985-598885998607899999874133123667999999999999708997999965877898899889999999
Q ss_pred HCC
Q ss_conf 479
Q gi|254780487|r 149 NRN 151 (217)
Q Consensus 149 ~~g 151 (217)
T Consensus 143 ~lG 145 (169)
T cd00544 143 ELG 145 (169)
T ss_pred HHH
T ss_conf 999