HHsearch alignment for GI: 254780487 and conserved domain: cd00550
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=98.65 E-value=2.8e-06 Score=58.76 Aligned_cols=178 Identities=13% Similarity=0.101 Sum_probs=93.1
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHH-HHHHHHHCCCCCC----CC--CCCCCCCC-------
Q ss_conf 3299983589874799999999998404861201388738068-9999985578731----14--43001451-------
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDS-KTIHRIGRIPKSH----II--PEKWKLRT------- 68 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~-~~~~~~~~~~~~~----~~--~~~~~~~~------- 68 (217)
T Consensus 1 r~i~~~GKG-GVGKTT~AaalA~~lA~~G~kVLl----vstDPahsLsd~f~~~~~~~~~~v~~~~nL~a~eid~~~~~~ 75 (254)
T cd00550 1 RYIFFGGKG-GVGKTTISAATAVRLAEQGKKVLL----VSTDPAHSLSDSFNQEFGKGPTPVKGVENLSAMEIDPQEALE 75 (254)
T ss_pred CEEEEECCC-CCCHHHHHHHHHHHHHHCCCEEEE----EECCCCCCHHHHHCCCCCCCCCEECCCCCCEEEEECHHHHHH
T ss_conf 989996898-554899999999999968994999----958986448898488667887110366884578728899999
Q ss_pred -------------CHHHHH----HHHHHHCCCHH--HHH---H--HHHHCCEEEEECCCC--CCCCCCCCCCHHHHHHH-
Q ss_conf -------------034788----99985023507--886---4--223288799922765--55667675308999997-
Q gi|254780487|r 69 -------------PASPHL----AAEIDGVIIDP--ATI---N--PPDINDSIIIEGIGG--LLVPLTTEYLFIDLIER- 121 (217)
Q Consensus 69 -------------~~~~~~----~~~~~~~~i~~--~~~---~--~~~~~D~viIEGagg--~~~~~~~~~~~~dla~~- 121 (217)
T Consensus 76 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~PG~~E~~~l~~i~~~~~~~~yD~IViDtaPTGhtLrlL~lP-~~l~~~~~~ 154 (254)
T cd00550 76 EYRQEVLEPIEANLLLEMLKGILEEELESPGIEEIAAFDEFSRYIDEAEYDVVVFDTAPTGHTLRLLSLP-TVLSWAREI 154 (254)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHCH-HHHHHHHHH
T ss_conf 9999999988632255668888999863985899999999999976069988998899856799875156-999999985
Q ss_pred H----CCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC------HH-------HHH---HH-HCCCCEE
Q ss_conf 4----79448970577650457999999998479907999976977800------59-------999---98-6199899
Q gi|254780487|r 122 W----QFPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIGDSMPK------VE-------ETI---VK-IGRIPHL 180 (217)
Q Consensus 122 l----~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~~~~~~------~~-------~~l---e~-~~~ipvL 180 (217)
T Consensus 155 L~d~~~t~~~lV~~PE~~~v~Et~R~~~~L~~~~i~v~~vvvN~v~p~~~~~~~~~~~r~~~q~~~l~~i~~~f~~~~v~ 234 (254)
T cd00550 155 LSDPERTSFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLLPEDVTNCPFLEARREIQQKYLEEIEELFSDLPVA 234 (254)
T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 37956558999977872169999999999997799989799958808776889999999999999999999870589679
Q ss_pred EEECCCC
Q ss_conf 9947888
Q gi|254780487|r 181 GRLPKID 187 (217)
Q Consensus 181 G~iP~~~ 187 (217)
T Consensus 235 -~vp~~~ 240 (254)
T cd00550 235 -KLPLLP 240 (254)
T ss_pred -EECCCC
T ss_conf -815788