HHsearch alignment for GI: 254780487 and conserved domain: cd01394

>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

Probab=92.96  E-value=0.7  Score=24.94  Aligned_cols=119  Identities=12%  Similarity=0.072  Sum_probs=55.4

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCCCCCCE-ECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             9998358987479999999999840486120-138873806899999855787311443001451034788999850235
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALNAYYWKPI-QSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII   83 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv-~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   83 (217)
T Consensus        22 t~i~G-~pG~GKStl~lq~a~~~~~~g~~v~Yidt--E~~~~er~~qi~~~~~~~~~~~i~v~~~~~~~~~~-----~~i   93 (218)
T cd01394          22 TQVYG-PPGTGKTNIAIQLAVETAGQGKKVAYIDT--EGLSSERFRQIAGDRPERAASSIIVFEPMDFNEQG-----RAI   93 (218)
T ss_pred             EEEEC-CCCCCHHHHHHHHHHHHHHCCCEEEEEEC--CCCCCHHHHHHHHHHHHHHHCCCEEECCCCHHHHH-----HHH
T ss_conf             99989-99984999999999998636986999966--55676999999875366653051462678768899-----999


Q ss_pred             HHHHHHHHHHCCEEEEECCCCCCCCCCCCC---------------CHHHHHHHHCCCEEEEEC
Q ss_conf             078864223288799922765556676753---------------089999974794489705
Q gi|254780487|r   84 DPATINPPDINDSIIIEGIGGLLVPLTTEY---------------LFIDLIERWQFPIILCAR  131 (217)
Q Consensus        84 ~~~~~~~~~~~D~viIEGagg~~~~~~~~~---------------~~~dla~~l~~~vILV~~  131 (217)
T Consensus        94 ~~~~~~~~~~~~lvViDSi~tl~~~e~~~~~~~~~~~r~l~~~~~~L~~~Ak~~~~~vil~nq  156 (218)
T cd01394          94 QETETFADEKVDLVVVDSATALYRLELGDDDTTIKNYRELAKQLTFLLWLARKHDVAVVITNQ  156 (218)
T ss_pred             HHHHHHHHCCCCEEEEECCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf             999976414772999914045545540689647999999999999999998766988999921