HHsearch alignment for GI: 254780487 and conserved domain: cd01983

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.82  E-value=9.2e-05  Score=49.26  Aligned_cols=96  Identities=19%  Similarity=0.138  Sum_probs=62.2

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             29998358987479999999999840486120138873806899999855787311443001451034788999850235
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII   83 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   83 (217)
T Consensus         1 ~i~~~~~k-GvGKTT~a~~La~~la~~g~~Vl~vD---------------------------------------------   34 (99)
T cd01983           1 VIVVTGKG-GVGKTTLAANLAAALAKRGKRVLLID---------------------------------------------   34 (99)
T ss_pred             CEEEECCC-CCCHHHHHHHHHHHHHHCCCEEEEEC---------------------------------------------
T ss_conf             98985899-77689999999999998899699986---------------------------------------------


Q ss_pred             HHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHH---HHHHHCCCEEEEEEEC
Q ss_conf             0788642232887999227655566767530899999747944897057765045799999---9998479907999976
Q gi|254780487|r   84 DPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSL---ETLRNRNINIIGIAFI  160 (217)
Q Consensus        84 ~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~---~~~~~~g~~i~GiIlN  160 (217)
T Consensus        35 -----------d~iiiD~~~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~n   99 (99)
T cd01983          35 -----------DYVLIDTPPGLGLLVLL----CLLALLAADLVIIVTTPEALAVLGARRLTEVVLELAIEGLRPVGVVVN   99 (99)
T ss_pred             -----------CCEEECCCCCCCHHHHH----HHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf             -----------71788589988846899----998787589589965984889999999999999841069815788539