HHsearch alignment for GI: 254780487 and conserved domain: cd03110
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=99.08 E-value=2.2e-09 Score=78.26 Aligned_cols=160 Identities=19% Similarity=0.277 Sum_probs=88.0
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHH--HHHHHHCCCCCCCC-----CCCCCCCCCHH-----
Q ss_conf 2999835898747999999999984048612013887380689--99998557873114-----43001451034-----
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSK--TIHRIGRIPKSHII-----PEKWKLRTPAS----- 71 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~--~~~~~~~~~~~~~~-----~~~~~~~~~~~----- 71 (217)
T Consensus 1 kIaV~SgKGGVGKTT~a~nLA~~l~~V~l--------iD~D~~~~n~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~g 71 (179)
T cd03110 1 QIAVISGKGGTGKTTVTAALAALLKNVVL--------ADCDVDAPNLHLFLKPEIEEEEDFIVGGKKAV-IDPELCISCG 71 (179)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHCCCCEE--------EEECCCCCCHHHHCCCCCCCCEEEEECCCCCE-ECHHHHHHCC
T ss_conf 98999589986099999999997428719--------99418998577771876563212230465335-1506653235
Q ss_pred --HHHHHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf --788999850235078864223288799922765556676753089999974794489705776504579999999984
Q gi|254780487|r 72 --PHLAAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLRN 149 (217)
Q Consensus 72 --~~~~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~~ 149 (217)
T Consensus 72 ~~~~~~~~~---~~~~~~~~~~~~~D~viiD~Ppg~~~~~~------~al~~ad-~~iiVttP~~~si~d~~r~i~l~~~ 141 (179)
T cd03110 72 LCGKLVTEV---RKHAKEIAKAEGAELIIIDGPPGIGCPVI------ASLTGAD-AALLVTEPTPSGLHDLERAVELVRH 141 (179)
T ss_pred CHHHHHHHH---HHHHHHHHHCCCCCEEEEECCCCCCHHHH------HHHHCCC-EEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf 176889999---99999986443799899818999757899------9997399-4999819947899999999999998
Q ss_pred CCCEEEEEEECCCCCC-C----HHHHHHHHCCCCEEEEEC
Q ss_conf 7990799997697780-0----599999861998999947
Q gi|254780487|r 150 RNINIIGIAFIGDSMP-K----VEETIVKIGRIPHLGRLP 184 (217)
Q Consensus 150 ~g~~i~GiIlN~~~~~-~----~~~~le~~~~ipvLG~iP 184 (217)
T Consensus 142 ~~~~~-gvV~Nr~~~~~~~~~~i~~~~~~-~~vp~LG~iP 179 (179)
T cd03110 142 FGIPV-GVVINKYDLNDEIAEEIEDYCEE-EGIPILGKIP 179 (179)
T ss_pred CCCCE-EEEEECCCCCCCCHHHHHHHHHH-HCCCEEEECC
T ss_conf 29978-99996887887634899999998-0999898387