HHsearch alignment for GI: 254780487 and conserved domain: cd03113

>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=90.71  E-value=1.3  Score=23.36  Aligned_cols=176  Identities=20%  Similarity=0.172  Sum_probs=83.3

Q ss_pred             CEEEEECC-CCCCCHHHHHHHHHHHHHCCCCC------------------CEECC--------CCCCCHHHHHHHHHCCC
Q ss_conf             32999835-89874799999999998404861------------------20138--------87380689999985578
Q gi|254780487|r    3 LRLVIVGT-DTSVGKTIFASALVHALNAYYWK------------------PIQSG--------MYEETDSKTIHRIGRIP   55 (217)
Q Consensus         3 ~~i~I~GT-~t~vGKT~vs~~L~~~l~~~~~K------------------Pv~~G--------~~~~~D~~~~~~~~~~~   55 (217)
T Consensus         1 Kyi~VtGGV~SglGKGi~~aSig~ll~~~g~~V~~~K~DPYlNvD~GtM~P~eHGEVfV~~DG~EtDlDlG~YERFl~~~   80 (255)
T cd03113           1 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTAQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDTN   80 (255)
T ss_pred             CEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCEECCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCC
T ss_conf             98999488201573089999999999978975889842565013899888454761778788761046664145435787


Q ss_pred             CCCCC-CCC-CCC---------------CCCHHHHHHHHHHHCCCHHHHHHH--HHHCCEEEEECCCCCCCCCCCCCCHH
Q ss_conf             73114-430-014---------------510347889998502350788642--23288799922765556676753089
Q gi|254780487|r   56 KSHII-PEK-WKL---------------RTPASPHLAAEIDGVIIDPATINP--PDINDSIIIEGIGGLLVPLTTEYLFI  116 (217)
Q Consensus        56 ~~~~~-~~~-~~~---------------~~~~~~~~~~~~~~~~i~~~~~~~--~~~~D~viIEGagg~~~~~~~~~~~~  116 (217)
T Consensus        81 lt~~~niTtGkiy~~VI~kER~G~YLGkTVQvIPHvTdeI-----k~~I~~~a~~~~~Di~ivEiGGTVGD--iEs~pFl  153 (255)
T cd03113          81 LSRDNNITTGKIYSSVIEKERRGDYLGKTVQVIPHITDEI-----KERIRRVAEKSGADVVIVEIGGTVGD--IESLPFL  153 (255)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHH-----HHHHHHHHCCCCCCEEEEECCCEEEC--CCHHHHH
T ss_conf             7776775052889999877644676897068878736999-----99999860468997899976863522--4220799


Q ss_pred             HHHHH----HCC-CEEEEECC---CCCHH-----HHHHHHHHHHHHCCCEEEEEEECC--CCCCCHHHHHHHHCCCCEEE
Q ss_conf             99997----479-44897057---76504-----579999999984799079999769--77800599999861998999
Q gi|254780487|r  117 DLIER----WQF-PIILCART---SLGTI-----NHSLLSLETLRNRNINIIGIAFIG--DSMPKVEETIVKIGRIPHLG  181 (217)
Q Consensus       117 dla~~----l~~-~vILV~~~---~~g~i-----~~~~l~~~~~~~~g~~i~GiIlN~--~~~~~~~~~le~~~~ipvLG  181 (217)
T Consensus       154 EAiRQl~~e~g~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lr~~GI~PDiivcRse~~l~~~~k~KIa~fc~V~~~~  233 (255)
T cd03113         154 EAIRQMKLELGRENVLFIHVTLVPYLKAAGELKTKPTQHSVKELRSIGIQPDILVCRSEKPLPPEIREKIALFCDVPPEA  233 (255)
T ss_pred             HHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCHHH
T ss_conf             99999986439875799987630022787643466428999999975899887998057869978999999854998788


Q ss_pred             EECC
Q ss_conf             9478
Q gi|254780487|r  182 RLPK  185 (217)
Q Consensus       182 ~iP~  185 (217)
T Consensus       234 Vi~~  237 (255)
T cd03113         234 VISA  237 (255)
T ss_pred             EEEC
T ss_conf             7986