HHsearch alignment for GI: 254780487 and conserved domain: pfam00448

>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=97.93  E-value=0.00083  Score=43.27  Aligned_cols=159  Identities=16%  Similarity=0.175  Sum_probs=78.3

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE--ECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             29998358987479999999999840486120--1388738068999998557873114430014510347889998502
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPI--QSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGV   81 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv--~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (217)
T Consensus         3 vi~lvGp-tGvGKTTTiaKLAa~~~~~~~~V~lit~Dt~R~gA~eQL~~ya~~l----~v~~~~~~~~~d~~~~~~----   73 (196)
T pfam00448         3 VILLVGL-QGSGKTTTIAKLAAYLKKQGKKVLLVAADTFRAAAIEQLKQLAERL----GVPVFGSGTGSDPAAVAF----   73 (196)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHC----CCEEEECCCCCCHHHHHH----
T ss_conf             9999899-9998899999999999977992899975877688999999999863----981781487778789999----


Q ss_pred             CCHHHHHH-HHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHH----CCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             35078864-223288799922765556676753089999974----7944897057765045799999999847990799
Q gi|254780487|r   82 IIDPATIN-PPDINDSIIIEGIGGLLVPLTTEYLFIDLIERW----QFPIILCARTSLGTINHSLLSLETLRNRNINIIG  156 (217)
Q Consensus        82 ~i~~~~~~-~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l----~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~G  156 (217)
T Consensus        74 ---~~l~~~~~~~~D~IlIDTaGr~~---~d~~~~~el~~~~~~~~~~~~~LVl~a~~~~--~~~~~~~~f-~~~~~~~~  144 (196)
T pfam00448        74 ---DAVEKAKAENYDVVLVDTAGRLQ---NDKNLMDELKKIKRVIAPDEVLLVLDATTGQ--NALNQAKAF-NEAVGITG  144 (196)
T ss_pred             ---HHHHHHHHCCCCEEEEECCCCCC---CCHHHHHHHHHHHHHCCCCCEEEEEECCCCC--CHHHHHHHH-HHHCCCCC
T ss_conf             ---99999884689999998999874---7677899999998522873028998567782--137899987-60047762


Q ss_pred             EEECCCC-CCCHHHH--HHHHCCCCEE
Q ss_conf             9976977-8005999--9986199899
Q gi|254780487|r  157 IAFIGDS-MPKVEET--IVKIGRIPHL  180 (217)
Q Consensus       157 iIlN~~~-~~~~~~~--le~~~~ipvL  180 (217)
T Consensus       145 ~I~TKlDet~~~G~~l~~~~~~~~Pi~  171 (196)
T pfam00448       145 VILTKLDGDAKGGAALSIAAETGKPIK  171 (196)
T ss_pred             EEEEEECCCCCCCHHHHHHHHHCCCEE
T ss_conf             688840578875299989999896979