HHsearch alignment for GI: 254780487 and conserved domain: pfam00448
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=97.93 E-value=0.00083 Score=43.27 Aligned_cols=159 Identities=16% Similarity=0.175 Sum_probs=78.3
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE--ECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 29998358987479999999999840486120--1388738068999998557873114430014510347889998502
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPI--QSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGV 81 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv--~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (217)
T Consensus 3 vi~lvGp-tGvGKTTTiaKLAa~~~~~~~~V~lit~Dt~R~gA~eQL~~ya~~l----~v~~~~~~~~~d~~~~~~---- 73 (196)
T pfam00448 3 VILLVGL-QGSGKTTTIAKLAAYLKKQGKKVLLVAADTFRAAAIEQLKQLAERL----GVPVFGSGTGSDPAAVAF---- 73 (196)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHC----CCEEEECCCCCCHHHHHH----
T ss_conf 9999899-9998899999999999977992899975877688999999999863----981781487778789999----
Q ss_pred CCHHHHHH-HHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHH----CCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 35078864-223288799922765556676753089999974----7944897057765045799999999847990799
Q gi|254780487|r 82 IIDPATIN-PPDINDSIIIEGIGGLLVPLTTEYLFIDLIERW----QFPIILCARTSLGTINHSLLSLETLRNRNINIIG 156 (217)
Q Consensus 82 ~i~~~~~~-~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l----~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~G 156 (217)
T Consensus 74 ---~~l~~~~~~~~D~IlIDTaGr~~---~d~~~~~el~~~~~~~~~~~~~LVl~a~~~~--~~~~~~~~f-~~~~~~~~ 144 (196)
T pfam00448 74 ---DAVEKAKAENYDVVLVDTAGRLQ---NDKNLMDELKKIKRVIAPDEVLLVLDATTGQ--NALNQAKAF-NEAVGITG 144 (196)
T ss_pred ---HHHHHHHHCCCCEEEEECCCCCC---CCHHHHHHHHHHHHHCCCCCEEEEEECCCCC--CHHHHHHHH-HHHCCCCC
T ss_conf ---99999884689999998999874---7677899999998522873028998567782--137899987-60047762
Q ss_pred EEECCCC-CCCHHHH--HHHHCCCCEE
Q ss_conf 9976977-8005999--9986199899
Q gi|254780487|r 157 IAFIGDS-MPKVEET--IVKIGRIPHL 180 (217)
Q Consensus 157 iIlN~~~-~~~~~~~--le~~~~ipvL 180 (217)
T Consensus 145 ~I~TKlDet~~~G~~l~~~~~~~~Pi~ 171 (196)
T pfam00448 145 VILTKLDGDAKGGAALSIAAETGKPIK 171 (196)
T ss_pred EEEEEECCCCCCCHHHHHHHHHCCCEE
T ss_conf 688840578875299989999896979