HHsearch alignment for GI: 254780487 and conserved domain: pfam06564
>pfam06564 YhjQ YhjQ protein. This family consists of several bacterial YhjQ proteins. The function of this family is unknown. However, the family does contain a P-loop sequence motif suggesting a nucleotide binding function.
Probab=97.85 E-value=0.00016 Score=47.79 Aligned_cols=175 Identities=11% Similarity=-0.044 Sum_probs=78.6
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEC------------CCCCCCHHHHHHHHHCCCCC-CCC--CCCCC
Q ss_conf 9832999835898747999999999984048612013------------88738068999998557873-114--43001
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQS------------GMYEETDSKTIHRIGRIPKS-HII--PEKWK 65 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~------------G~~~~~D~~~~~~~~~~~~~-~~~--~~~~~ 65 (217)
T Consensus 1 Mk-iIai~s~KGGVGKTT~t~nLa~aLa~~G~rVLlID~Dpq~~l~~~~g~~~~~~~g~~~~~l~~~~~~~~~~~~~~gl 79 (244)
T pfam06564 1 MA-VLALQGVRGGVGTTSLTAALGWALQQLGESVLVIDASPDNLLRLHFNVDFDHSDGWARAELDGRPWRDAALRYTPGL 79 (244)
T ss_pred CE-EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHEEECCCE
T ss_conf 92-99996699986199999999999997799589996898742102358886434414899875997777444526975
Q ss_pred CCCC---HHHHHHHHHHHCC-----CHHHHH--HHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCC
Q ss_conf 4510---3478899985023-----507886--42232887999227655566767530899999747944897057765
Q gi|254780487|r 66 LRTP---ASPHLAAEIDGVI-----IDPATI--NPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLG 135 (217)
Q Consensus 66 ~~~~---~~~~~~~~~~~~~-----i~~~~~--~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g 135 (217)
T Consensus 80 ~llP~g~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yD~iliD~Pp~l------~~l~~~al~aad-~vLv~v~~d~~ 152 (244)
T pfam06564 80 DLLPFGQLTGAERENLQQLQPDLGAWAQRLQLLKASGQYRWILLDLPQGF------SPLTRQLLELAD-VTLAVVHADAN 152 (244)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC------HHHHHHHHHHCC-CEEEEECCCHH
T ss_conf 89728997478999898654437999998764213578999999799996------899999999769-60899688858
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEECCCCCCC-----HHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 0457999999998479907999976977800-----59999986199899994788888
Q gi|254780487|r 136 TINHSLLSLETLRNRNINIIGIAFIGDSMPK-----VEETIVKIGRIPHLGRLPKIDPI 189 (217)
Q Consensus 136 ~i~~~~l~~~~~~~~g~~i~GiIlN~~~~~~-----~~~~le~~~~ipvLG~iP~~~~~ 189 (217)
T Consensus 153 s--~~~l----~~~~~~~~~~ilvn~~d~~~~l~~d~~~~~~~~~~~~l~~~I~rd~~l 205 (244)
T pfam06564 153 C--HIRL----HQQALPAGCHLLINDFRIGSQLQDDLYQLWLQSQRRLLPIVVHRDEAM 205 (244)
T ss_pred H--HHHH----HHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCHH
T ss_conf 9--9997----323344677488642455768999999999986087257550798829