HHsearch alignment for GI: 254780487 and conserved domain: pfam06564

>pfam06564 YhjQ YhjQ protein. This family consists of several bacterial YhjQ proteins. The function of this family is unknown. However, the family does contain a P-loop sequence motif suggesting a nucleotide binding function.
Probab=97.85  E-value=0.00016  Score=47.79  Aligned_cols=175  Identities=11%  Similarity=-0.044  Sum_probs=78.6

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEC------------CCCCCCHHHHHHHHHCCCCC-CCC--CCCCC
Q ss_conf             9832999835898747999999999984048612013------------88738068999998557873-114--43001
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQS------------GMYEETDSKTIHRIGRIPKS-HII--PEKWK   65 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~------------G~~~~~D~~~~~~~~~~~~~-~~~--~~~~~   65 (217)
T Consensus         1 Mk-iIai~s~KGGVGKTT~t~nLa~aLa~~G~rVLlID~Dpq~~l~~~~g~~~~~~~g~~~~~l~~~~~~~~~~~~~~gl   79 (244)
T pfam06564         1 MA-VLALQGVRGGVGTTSLTAALGWALQQLGESVLVIDASPDNLLRLHFNVDFDHSDGWARAELDGRPWRDAALRYTPGL   79 (244)
T ss_pred             CE-EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHEEECCCE
T ss_conf             92-99996699986199999999999997799589996898742102358886434414899875997777444526975


Q ss_pred             CCCC---HHHHHHHHHHHCC-----CHHHHH--HHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCC
Q ss_conf             4510---3478899985023-----507886--42232887999227655566767530899999747944897057765
Q gi|254780487|r   66 LRTP---ASPHLAAEIDGVI-----IDPATI--NPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLG  135 (217)
Q Consensus        66 ~~~~---~~~~~~~~~~~~~-----i~~~~~--~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g  135 (217)
T Consensus        80 ~llP~g~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yD~iliD~Pp~l------~~l~~~al~aad-~vLv~v~~d~~  152 (244)
T pfam06564        80 DLLPFGQLTGAERENLQQLQPDLGAWAQRLQLLKASGQYRWILLDLPQGF------SPLTRQLLELAD-VTLAVVHADAN  152 (244)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC------HHHHHHHHHHCC-CEEEEECCCHH
T ss_conf             89728997478999898654437999998764213578999999799996------899999999769-60899688858


Q ss_pred             HHHHHHHHHHHHHHCCCEEEEEEECCCCCCC-----HHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             0457999999998479907999976977800-----59999986199899994788888
Q gi|254780487|r  136 TINHSLLSLETLRNRNINIIGIAFIGDSMPK-----VEETIVKIGRIPHLGRLPKIDPI  189 (217)
Q Consensus       136 ~i~~~~l~~~~~~~~g~~i~GiIlN~~~~~~-----~~~~le~~~~ipvLG~iP~~~~~  189 (217)
T Consensus       153 s--~~~l----~~~~~~~~~~ilvn~~d~~~~l~~d~~~~~~~~~~~~l~~~I~rd~~l  205 (244)
T pfam06564       153 C--HIRL----HQQALPAGCHLLINDFRIGSQLQDDLYQLWLQSQRRLLPIVVHRDEAM  205 (244)
T ss_pred             H--HHHH----HHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCHH
T ss_conf             9--9997----323344677488642455768999999999986087257550798829