BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780487|ref|YP_003064900.1| dithiobiotin synthetase
[Candidatus Liberibacter asiaticus str. psy62]
         (217 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780487|ref|YP_003064900.1| dithiobiotin synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 217

 Score =  440 bits (1132), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 217/217 (100%), Positives = 217/217 (100%)

Query: 1   MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHII 60
           MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHII
Sbjct: 1   MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHII 60

Query: 61  PEKWKLRTPASPHLAAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIE 120
           PEKWKLRTPASPHLAAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIE
Sbjct: 61  PEKWKLRTPASPHLAAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIE 120

Query: 121 RWQFPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIGDSMPKVEETIVKIGRIPHL 180
           RWQFPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIGDSMPKVEETIVKIGRIPHL
Sbjct: 121 RWQFPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIGDSMPKVEETIVKIGRIPHL 180

Query: 181 GRLPKIDPIDPDVLHQKFQEHFTQSLLQKYFYESLTF 217
           GRLPKIDPIDPDVLHQKFQEHFTQSLLQKYFYESLTF
Sbjct: 181 GRLPKIDPIDPDVLHQKFQEHFTQSLLQKYFYESLTF 217


>gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 820

 Score = 27.3 bits (59), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 14  VGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHR--IGRIP 55
           VGKT  A ++  A    Y +    G+Y+E D +   R  IG +P
Sbjct: 377 VGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMP 420


>gi|254780648|ref|YP_003065061.1| GTPase ObgE [Candidatus Liberibacter asiaticus str. psy62]
          Length = 335

 Score = 23.1 bits (48), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 183 LPKIDPIDPDVLHQKFQEHFTQSLLQKYFYESLT 216
           L +ID +D D L +K  E  TQ     + + S+T
Sbjct: 278 LSQIDTVDSDTLARKKNELATQCGQVPFEFSSIT 311


>gi|254781149|ref|YP_003065562.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 266

 Score = 21.9 bits (45), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 2/28 (7%)

Query: 5   LVIVGTDTSVGKTIFA--SALVHALNAY 30
           L+++G   S+GKT FA  +AL  A++ +
Sbjct: 144 LILIGARPSMGKTTFALSTALHMAMSGH 171


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.141    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144,354
Number of Sequences: 1233
Number of extensions: 6160
Number of successful extensions: 19
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 11
length of query: 217
length of database: 328,796
effective HSP length: 70
effective length of query: 147
effective length of database: 242,486
effective search space: 35645442
effective search space used: 35645442
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 36 (18.5 bits)