HHsearch alignment for GI: 254780488 and conserved domain: COG3033
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism].
Probab=98.00 E-value=0.00018 Score=50.33 Aligned_cols=354 Identities=18% Similarity=0.175 Sum_probs=172.4
Q ss_pred CCCEEEECHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHH---
Q ss_conf 98764641023775367878999999999999852201024568978999999999720378641110265420256---
Q gi|254780488|r 38 NHDKIIDAISSWWVITHGHRHPIIMNAIRSASENYDQIIFSEYTHEPAEQLARLLIKIAPLGLQYVFFSDSGSTSIE--- 114 (423)
Q Consensus 38 dG~~~lD~~~g~~~~~lGh~~~~i~~a~~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~SGsEA~e--- 114 (423)
T Consensus 44 Sedv~IDLLTDSGTgam--s~~-qwaamm~GDEA--Yag-----srs~~~L~~avkdif--Gfq~~iPthQGRgAE~Il~ 111 (471)
T COG3033 44 SEDVFIDLLTDSGTGAM--TDK-QWAAMMRGDEA--YAG-----SRSYYALADAVKDIF--GFQYTIPTHQGRGAENILI 111 (471)
T ss_pred CCCEEEEEECCCCCCCC--CHH-HHHHHHCCCHH--HCC-----CCCHHHHHHHHHHHC--CCEEEEECCCCCCHHHHHH
T ss_conf 56457885305886625--389-99988525354--315-----533899999999861--7346512557731777889
Q ss_pred -HHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CEECCCCCCCCCCCCHHHHHCCC
Q ss_conf -7777643001334433211343202566532112343223333332223445421-00012222222111101221277
Q gi|254780488|r 115 -VALKMALGFFNNNNMPRNKIVVMEHGYHGDTIGSMSVSMRGAFNNSYEPLLFDVE-TIPFPHHNEEQKTLDDLEKHCST 192 (423)
Q Consensus 115 -~Alklar~~~~~~~~~r~~ii~~~~~yHG~t~~a~s~s~~~~~~~~~~p~~~~~~-~i~~~~~~~~~~~l~~l~~~~~~ 192 (423)
T Consensus 112 ~i~ik~~~~------~pg~~~~~~sN~~FdTTr~h~~~ng-~~~~n~~~~ea~d~~~~~pFKGd~-D~~kLe~lidevG~ 183 (471)
T COG3033 112 PILIKKGEQ------EPGSKMVAFSNYHFDTTRGHIQING-ATPRNVYVDEAFDTEVKYPFKGNF-DLEKLERLIDEVGA 183 (471)
T ss_pred HHHHHHCCC------CCCCCCCCCCCCEECCHHHHHHHCC-CCCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHCC
T ss_conf 998410320------6774101234531202267787548-702123166556645568877865-79999999987371
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCC------CCCC---------C
Q ss_conf 511343116554321122223332110011011123420001221244445554311223------3444---------4
Q gi|254780488|r 193 QKIAAFLVEPLILGAGGMQTYRPYILKEFMRITKKYDTLLIADEVMTGWGRTGKIFACNH------ADIT---------P 257 (423)
Q Consensus 193 ~~iaavi~EP~i~~~gG~~~~~~~~l~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~~~------~gi~---------P 257 (423)
T Consensus 184 ~nvp~I~~t-iT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~R--fa-ENaYFIk~rE~gYrd~sI~~IarEm~sYa 259 (471)
T COG3033 184 DNVPYIVLT-ITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAAR--FA-ENAYFIKQREPGYRDWSIEEIAREMYSYA 259 (471)
T ss_pred CCCCEEEEE-EECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEHHH--HH-HHHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 458689999-962666787120776999999998719958964456--65-42022342476555460999999998651
Q ss_pred CEEECCCCCCCCCCCCCCCCCCHH--HHHHHCCCCCCC-CCCCCCCCCCCC----CCHHHHHCCHHHCCCCCCCCCCCCH
Q ss_conf 202013443322234443322401--321000122222-222333332222----1001100000000011233222100
Q gi|254780488|r 258 DILCLSKGITGGALPLAATLCSEE--IFDSHLSSDKKK-TFFHSSSYTANP----IACAAALANLQIWEKEPVIERIKNL 330 (423)
Q Consensus 258 Di~~~gK~l~gG~~pisav~~~~~--i~~~~~~~~~~~-~~~h~~T~~gnp----l~~aaa~a~L~~i~~~~l~~~~~~~ 330 (423)
T Consensus 260 D~~~mS~KK-D~lvnmGGfl~~~D~~~fDvy~~~~~~~V~~eG~~tYGgl~GrdmealAvG---L~e~~~~~yl~~Rv~Q 335 (471)
T COG3033 260 DGCTMSAKK-DGLVNMGGFLCFKDDSFFDVYEECRTLVVVQEGFPTYGGLAGRDMEALAVG---LREGVNFDYLAHRVAQ 335 (471)
T ss_pred HHHEEECCC-CCEECCCCEEEECCCCHHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHH---HHHHCCCHHHHHHHHH
T ss_conf 243020254-524224657886475077899998766575126666576442328999978---8874270899999999
Q ss_pred HHHHHHHHHHHHHCCCEEEECCCCCEEE-EEECCCCCCCCCHHHHHHHHHHHHCCEEEEEC------------------C
Q ss_conf 2678989999751897777745533999-99706876664106899999999788599951------------------9
Q gi|254780488|r 331 ERMHADRLSLLKSNKKFVNIRQMGTIVA-LDFNVQNKGYFFDKNAKLKNFFREKKILIRPL------------------G 391 (423)
Q Consensus 331 g~~l~~~l~~L~~~~~v~~vrG~Gl~~~-iel~~~~~~~~~~~~~~l~~~l~~~Gil~~~~------------------g 391 (423)
T Consensus 336 v~YL~~~l~~~GV-pi~~paGGHavfvda~~~lphip~eqFpaqala~ely~e~GiRavElG~~~~~rd~ktg~q~~~~~ 414 (471)
T COG3033 336 VQYLADGLEEAGV-PIVQPAGGHAVFVDAGKFLPHIPAEQFPAQALACELYKEAGIRAVELGSFSLGRDPKTGKQHPPPA 414 (471)
T ss_pred HHHHHHHHHHCCC-EEEECCCCCEEEEEHHHHCCCCCHHHCCHHHHHHHHHHHHCEEEEEEECEECCCCCCCCCCCCCCH
T ss_conf 9999988886597-368527871699634563677882448477899999998382366420111155877643478712
Q ss_pred CEEEECCC-CCCCHHHHHHHHHHHHHHHHH
Q ss_conf 98995689-878799999999999999987
Q gi|254780488|r 392 HIMYLMPP-YCITATDLDHIYNTINEAVDF 420 (423)
Q Consensus 392 n~i~l~Pp-l~it~~eId~~l~~l~~aL~~ 420 (423)
T Consensus 415 elvRltipRrtYt~~HmD~V~~a~~~l~e~ 444 (471)
T COG3033 415 ELVRLTIPRRTYTQTHMDFVIEAFKALKEN 444 (471)
T ss_pred HEEEEECCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 304674351114566799999999999854