HHsearch alignment for GI: 254780488 and conserved domain: PRK09331
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional.
Probab=98.99 E-value=1.8e-08 Score=77.38 Aligned_cols=334 Identities=14% Similarity=0.154 Sum_probs=183.7
Q ss_pred CCCCHHHHHHHHHHHHHHCCH-----HCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 878999999999999852201-----024568978999999999720378641110265420256777764300133443
Q gi|254780488|r 55 GHRHPIIMNAIRSASENYDQI-----IFSEYTHEPAEQLARLLIKIAPLGLQYVFFSDSGSTSIEVALKMALGFFNNNNM 129 (423)
Q Consensus 55 Gh~~~~i~~a~~~q~~~~~~~-----~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~SGsEA~e~Alklar~~~~~~~~ 129 (423)
T Consensus 29 g~lt~ea~ka~~~~gdgysvcd~C~~~LD~i~~Ppi~~f~~~la~fl--g~D~~rlvnGar~g~qAv~~a~c~------- 99 (386)
T PRK09331 29 GRLTPEARKALIEYGDGYSVCDYCKGRLDKIEKPPIADFHEDLAKFL--GMDEARVTPGAREGKFAVMHALCK------- 99 (386)
T ss_pred CCCCHHHHHHHHHHCCCCCHHHHHCCHHHCCCCCCHHHHHHHHHHHH--CCCEEEECCCCCHHHHHHHHHHHC-------
T ss_conf 96899999999997488736645411011255998899999999984--996378528842789999998636-------
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCEECCCCCCCCCCCCHHHHHCCCCCEEEEEC-CCCCCCC
Q ss_conf 32113432025665321123432233333322234-454210001222222211110122127751134311-6554321
Q gi|254780488|r 130 PRNKIVVMEHGYHGDTIGSMSVSMRGAFNNSYEPL-LFDVETIPFPHHNEEQKTLDDLEKHCSTQKIAAFLV-EPLILGA 207 (423)
Q Consensus 130 ~r~~ii~~~~~yHG~t~~a~s~s~~~~~~~~~~p~-~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~iaavi~-EP~i~~~ 207 (423)
T Consensus 100 ~GD~VI-l~rnaHyS~~~A~elaG~~~~---~v~~~~~~~~~I~~~---~~~~~Iee~~~e~g-k~~aL~llt~p--dy~ 169 (386)
T PRK09331 100 KGDYVV-LDGLAHYTSYVAAERAGLNVR---EVPKTGYPDYRITPE---AYAEKIEEVEDETG-KPPALALLTHV--DGN 169 (386)
T ss_pred CCCEEE-ECCCCHHHHHHHHHHCCCEEE---EECCCCCCCCCCCHH---HHHHHHHHHHHHCC-CCCEEEEEECC--CCC
T ss_conf 999798-448405999999997598589---936877723450800---57999999998618-98559999688--866
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECC--CCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 12222333211001101112342000122124444555431122334444202013--4433222344433224013210
Q gi|254780488|r 208 GGMQTYRPYILKEFMRITKKYDTLLIADEVMTGWGRTGKIFACNHADITPDILCLS--KGITGGALPLAATLCSEEIFDS 285 (423)
Q Consensus 208 gG~~~~~~~~l~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~gi~PDi~~~g--K~l~gG~~pisav~~~~~i~~~ 285 (423)
T Consensus 170 yGn-~~--d-~~~i~~iah~~~ip~lvdeA~~-~~~----~P~~a~~~GaD~~v~S~HK~~-~s~t~sgvL~~~~e~~d~ 239 (386)
T PRK09331 170 YGN-LH--D-AKKIAKVAHQYGIPLLLNGAYT-VGR----MPVDGKELGADFIVGSGHKSM-AASAPSGVLATTEEYADK 239 (386)
T ss_pred CCC-HH--H-HHHHHHHHHHCCCCEEEECCCC-CCC----CCCCHHHCCCCEEEEECCCCC-CCCCCCEEEECCCCHHHH
T ss_conf 445-46--3-8999999987498189814433-577----897466639988986345444-234631244304530155
Q ss_pred HCCCCCC----CCCCCCCCCCCCCCCHHHHHCCHHHCCC-CCCCCCCCCHHHHHHHHHHHHHHCCCEE-EECCCCCEEEE
Q ss_conf 0012222----2222333332222100110000000001-1233222100267898999975189777-77455339999
Q gi|254780488|r 286 HLSSDKK----KTFFHSSSYTANPIACAAALANLQIWEK-EPVIERIKNLERMHADRLSLLKSNKKFV-NIRQMGTIVAL 359 (423)
Q Consensus 286 ~~~~~~~----~~~~h~~T~~gnpl~~aaa~a~L~~i~~-~~l~~~~~~~g~~l~~~l~~L~~~~~v~-~vrG~Gl~~~i 359 (423)
T Consensus 240 v~R~s~~~~~Kev~mLgcTs~g~psy--~LMASfd~vrerv~~~d~ev~~ar~~~~El~kIeG~~~lge~P~~hdl~~-- 315 (386)
T PRK09331 240 VFRTSKKFGVKEVELLGCTLRGAPLV--TLMASFPHVKERVKNWDEEVEKARWFVDELEKIEGFKQLGEKPRNHDLMR-- 315 (386)
T ss_pred HHHCCCCCHHHHHHHHCCCCCCCHHH--HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCEE--
T ss_conf 65226430578998853633464089--99806599999998778999999999999860876554065778777435--
Q ss_pred EECCCCC----CCCCHHHHHHHHHHHHCCEEEEECC--CEEEECCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9706876----6641068999999997885999519--98995689878799999999999999987559
Q gi|254780488|r 360 DFNVQNK----GYFFDKNAKLKNFFREKKILIRPLG--HIMYLMPPYCITATDLDHIYNTINEAVDFLEL 423 (423)
Q Consensus 360 el~~~~~----~~~~~~~~~l~~~l~~~Gil~~~~g--n~i~l~Ppl~it~~eId~~l~~l~~aL~~lel 423 (423)
T Consensus 316 -fdtt~~~~ia~~~~~~Gy~l~~~Lk~r~I~ge~sg~t~~lkl~-s~G~t~E~v~~li~A~keIaeky~~ 383 (386)
T PRK09331 316 -FETPSFDEIAKKHKRRGFFLYEELKKRGIHGIKPGLTKEFKLS-TYGLTWEQVEYVADSFKEIAEKYGL 383 (386)
T ss_pred -ECCCCEEEEHHHCCCCCEEHHHHHHHCCCEEEECCCCEEEEEE-ECCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf -3376412223204866056799997679649955710178788-6178789999999999999998289