HHsearch alignment for GI: 254780488 and conserved domain: PRK09331

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional.
Probab=98.99  E-value=1.8e-08  Score=77.38  Aligned_cols=334  Identities=14%  Similarity=0.154  Sum_probs=183.7

Q ss_pred             CCCCHHHHHHHHHHHHHHCCH-----HCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf             878999999999999852201-----024568978999999999720378641110265420256777764300133443
Q gi|254780488|r   55 GHRHPIIMNAIRSASENYDQI-----IFSEYTHEPAEQLARLLIKIAPLGLQYVFFSDSGSTSIEVALKMALGFFNNNNM  129 (423)
Q Consensus        55 Gh~~~~i~~a~~~q~~~~~~~-----~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~SGsEA~e~Alklar~~~~~~~~  129 (423)
T Consensus        29 g~lt~ea~ka~~~~gdgysvcd~C~~~LD~i~~Ppi~~f~~~la~fl--g~D~~rlvnGar~g~qAv~~a~c~-------   99 (386)
T PRK09331         29 GRLTPEARKALIEYGDGYSVCDYCKGRLDKIEKPPIADFHEDLAKFL--GMDEARVTPGAREGKFAVMHALCK-------   99 (386)
T ss_pred             CCCCHHHHHHHHHHCCCCCHHHHHCCHHHCCCCCCHHHHHHHHHHHH--CCCEEEECCCCCHHHHHHHHHHHC-------
T ss_conf             96899999999997488736645411011255998899999999984--996378528842789999998636-------


Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCEECCCCCCCCCCCCHHHHHCCCCCEEEEEC-CCCCCCC
Q ss_conf             32113432025665321123432233333322234-454210001222222211110122127751134311-6554321
Q gi|254780488|r  130 PRNKIVVMEHGYHGDTIGSMSVSMRGAFNNSYEPL-LFDVETIPFPHHNEEQKTLDDLEKHCSTQKIAAFLV-EPLILGA  207 (423)
Q Consensus       130 ~r~~ii~~~~~yHG~t~~a~s~s~~~~~~~~~~p~-~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~iaavi~-EP~i~~~  207 (423)
T Consensus       100 ~GD~VI-l~rnaHyS~~~A~elaG~~~~---~v~~~~~~~~~I~~~---~~~~~Iee~~~e~g-k~~aL~llt~p--dy~  169 (386)
T PRK09331        100 KGDYVV-LDGLAHYTSYVAAERAGLNVR---EVPKTGYPDYRITPE---AYAEKIEEVEDETG-KPPALALLTHV--DGN  169 (386)
T ss_pred             CCCEEE-ECCCCHHHHHHHHHHCCCEEE---EECCCCCCCCCCCHH---HHHHHHHHHHHHCC-CCCEEEEEECC--CCC
T ss_conf             999798-448405999999997598589---936877723450800---57999999998618-98559999688--866


Q ss_pred             CCCCCCCCCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECC--CCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             12222333211001101112342000122124444555431122334444202013--4433222344433224013210
Q gi|254780488|r  208 GGMQTYRPYILKEFMRITKKYDTLLIADEVMTGWGRTGKIFACNHADITPDILCLS--KGITGGALPLAATLCSEEIFDS  285 (423)
Q Consensus       208 gG~~~~~~~~l~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~gi~PDi~~~g--K~l~gG~~pisav~~~~~i~~~  285 (423)
T Consensus       170 yGn-~~--d-~~~i~~iah~~~ip~lvdeA~~-~~~----~P~~a~~~GaD~~v~S~HK~~-~s~t~sgvL~~~~e~~d~  239 (386)
T PRK09331        170 YGN-LH--D-AKKIAKVAHQYGIPLLLNGAYT-VGR----MPVDGKELGADFIVGSGHKSM-AASAPSGVLATTEEYADK  239 (386)
T ss_pred             CCC-HH--H-HHHHHHHHHHCCCCEEEECCCC-CCC----CCCCHHHCCCCEEEEECCCCC-CCCCCCEEEECCCCHHHH
T ss_conf             445-46--3-8999999987498189814433-577----897466639988986345444-234631244304530155


Q ss_pred             HCCCCCC----CCCCCCCCCCCCCCCHHHHHCCHHHCCC-CCCCCCCCCHHHHHHHHHHHHHHCCCEE-EECCCCCEEEE
Q ss_conf             0012222----2222333332222100110000000001-1233222100267898999975189777-77455339999
Q gi|254780488|r  286 HLSSDKK----KTFFHSSSYTANPIACAAALANLQIWEK-EPVIERIKNLERMHADRLSLLKSNKKFV-NIRQMGTIVAL  359 (423)
Q Consensus       286 ~~~~~~~----~~~~h~~T~~gnpl~~aaa~a~L~~i~~-~~l~~~~~~~g~~l~~~l~~L~~~~~v~-~vrG~Gl~~~i  359 (423)
T Consensus       240 v~R~s~~~~~Kev~mLgcTs~g~psy--~LMASfd~vrerv~~~d~ev~~ar~~~~El~kIeG~~~lge~P~~hdl~~--  315 (386)
T PRK09331        240 VFRTSKKFGVKEVELLGCTLRGAPLV--TLMASFPHVKERVKNWDEEVEKARWFVDELEKIEGFKQLGEKPRNHDLMR--  315 (386)
T ss_pred             HHHCCCCCHHHHHHHHCCCCCCCHHH--HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCEE--
T ss_conf             65226430578998853633464089--99806599999998778999999999999860876554065778777435--


Q ss_pred             EECCCCC----CCCCHHHHHHHHHHHHCCEEEEECC--CEEEECCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9706876----6641068999999997885999519--98995689878799999999999999987559
Q gi|254780488|r  360 DFNVQNK----GYFFDKNAKLKNFFREKKILIRPLG--HIMYLMPPYCITATDLDHIYNTINEAVDFLEL  423 (423)
Q Consensus       360 el~~~~~----~~~~~~~~~l~~~l~~~Gil~~~~g--n~i~l~Ppl~it~~eId~~l~~l~~aL~~lel  423 (423)
T Consensus       316 -fdtt~~~~ia~~~~~~Gy~l~~~Lk~r~I~ge~sg~t~~lkl~-s~G~t~E~v~~li~A~keIaeky~~  383 (386)
T PRK09331        316 -FETPSFDEIAKKHKRRGFFLYEELKKRGIHGIKPGLTKEFKLS-TYGLTWEQVEYVADSFKEIAEKYGL  383 (386)
T ss_pred             -ECCCCEEEEHHHCCCCCEEHHHHHHHCCCEEEECCCCEEEEEE-ECCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             -3376412223204866056799997679649955710178788-6178789999999999999998289