HHsearch alignment for GI: 254780488 and conserved domain: TIGR01140
>TIGR01140 CobD L-threonine-O-3-phosphate decarboxylase, putative; InterPro: IPR005860 L-threonine-O-3-phosphate decarboxylase (CobD) was shown to decarboxylate L-threonine O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, which is the precursor for the linkage between the nucleotide loop and the corrin ring in the biosynthesis of cobalamin . The molecule is a dimer where each subunit consists of a large and small domain . This family contains pyridoxal phosphate-binding class II aminotransferases closely related to histidinol-phosphate aminotransferase (HisC). ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process.
Probab=97.21 E-value=0.0057 Score=40.25 Aligned_cols=312 Identities=16% Similarity=0.243 Sum_probs=176.0
Q ss_pred CCCEEEECHHHHHHHCCCCCCHH-HHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHH
Q ss_conf 98764641023775367878999-99999999985220102456897899999999972037864111026542025677
Q gi|254780488|r 38 NHDKIIDAISSWWVITHGHRHPI-IMNAIRSASENYDQIIFSEYTHEPAEQLARLLIKIAPLGLQYVFFSDSGSTSIEVA 116 (423)
Q Consensus 38 dG~~~lD~~~g~~~~~lGh~~~~-i~~a~~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~SGsEA~e~A 116 (423)
T Consensus 3 ~~~~lLDFsAni--nPl--gpP~S~~aa~~~aLd~~~r-----YPD~dY~hlrqA~AdH~q~~~dwvl~gnG~~e~i~la 73 (349)
T TIGR01140 3 DDDDLLDFSANI--NPL--GPPASVKAALAAALDALER-----YPDDDYIHLRQALADHHQVAADWVLAGNGELESIRLA 73 (349)
T ss_pred CCCCCCCCCCCC--CCC--CCCCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHH
T ss_conf 874303243457--888--8760204589874278760-----8884318999998654125601254599727888998
Q ss_pred HHHHHHCCCCCCCCCCEEEEEECCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEC----CCCCCCCCC---CCHHH
Q ss_conf 77643001334433211343202566--5321123432233333322234454210001----222222211---11012
Q gi|254780488|r 117 LKMALGFFNNNNMPRNKIVVMEHGYH--GDTIGSMSVSMRGAFNNSYEPLLFDVETIPF----PHHNEEQKT---LDDLE 187 (423)
Q Consensus 117 lklar~~~~~~~~~r~~ii~~~~~yH--G~t~~a~s~s~~~~~~~~~~p~~~~~~~i~~----~~~~~~~~~---l~~l~ 187 (423)
T Consensus 74 ~~t~------~~~Gd~~~V~-~P~F~eYgR~~----------~~~G-----ae~~ti~w~~~~~~~W~~~~dPseiA~l~ 131 (349)
T TIGR01140 74 AETL------VSRGDAVLVV-APAFAEYGREL----------ELAG-----AELKTIRWSLDEADGWRVLRDPSEIALLD 131 (349)
T ss_pred HHHC------CCCCCEEEEE-CCCCHHHHHHH----------HHCC-----CCEEEEEEEEECCCCCCCCCCHHHHHHHC
T ss_conf 8614------7888757870-88702679999----------8569-----81223457731688874557645665412
Q ss_pred HHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCC------CCCEEE
Q ss_conf 21277511343116554321122223332110011011123420001221244445554311223344------442020
Q gi|254780488|r 188 KHCSTQKIAAFLVEPLILGAGGMQTYRPYILKEFMRITKKYDTLLIADEVMTGWGRTGKIFACNHADI------TPDILC 261 (423)
Q Consensus 188 ~~~~~~~iaavi~EP~i~~~gG~~~~~~~~l~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~gi------~PDi~~ 261 (423)
T Consensus 132 A~-~s~h~~lilctP--nNPtG~-l~~r~~l~A~a~rc~~~N~~LllDEAF~dF~pPG~----E-~~l~p~l~~~P~~~v 202 (349)
T TIGR01140 132 AV-TSEHDLLILCTP--NNPTGD-LLERDALRALADRCKAVNIELLLDEAFLDFLPPGE----E-TSLVPSLKDTPNVVV 202 (349)
T ss_pred CC-CCCCCEEEEECC--CCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC----C-CCCCCHHHCCCCEEE
T ss_conf 68-833135311176--769898-62247899999888874046666556515789864----4-343413326897899
Q ss_pred ---CCC--CCCCCCCCCCCCCCCHH-HHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHCCCCCCCC----CCCCHH
Q ss_conf ---134--43322234443322401-32100012222222233333222210011000000000112332----221002
Q gi|254780488|r 262 ---LSK--GITGGALPLAATLCSEE-IFDSHLSSDKKKTFFHSSSYTANPIACAAALANLQIWEKEPVIE----RIKNLE 331 (423)
Q Consensus 262 ---~gK--~l~gG~~pisav~~~~~-i~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~~~l~~----~~~~~g 331 (423)
T Consensus 203 lRSLTKfy~lPG--LRlGylva~~Da~la~~r~~--------r~pW~vnalAaaag~~al~---~sef~q~tw~wl~~er 269 (349)
T TIGR01140 203 LRSLTKFYALPG--LRLGYLVAVDDALLARLRAA--------RRPWSVNALAAAAGAAALR---DSEFRQETWRWLAEER 269 (349)
T ss_pred ECCHHHHHCCHH--HHHHHHHCCCHHHHHHHHHH--------CCCCCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_conf 711155402502--44545551661789999974--------2899877689999999876---6789999987436677
Q ss_pred HHHHHHHHHHHHCCCEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHH-HHHCCEEEEECC-------CEEEECCCCCCC
Q ss_conf 678989999751897777745533999997068766641068999999-997885999519-------989956898787
Q gi|254780488|r 332 RMHADRLSLLKSNKKFVNIRQMGTIVALDFNVQNKGYFFDKNAKLKNF-FREKKILIRPLG-------HIMYLMPPYCIT 403 (423)
Q Consensus 332 ~~l~~~l~~L~~~~~v~~vrG~Gl~~~iel~~~~~~~~~~~~~~l~~~-l~~~Gil~~~~g-------n~i~l~Ppl~it 403 (423)
T Consensus 270 ar~~qaL~~l---P~l~v~Ps~anfLLl~~~~~--------~~dl~~~llt~~~IliRdc~~fpgLds~~~RVA---vRt 335 (349)
T TIGR01140 270 ARLRQALADL---PLLDVYPSRANFLLLKVERE--------DVDLQEELLTKERILIRDCLSFPGLDSDYYRVA---VRT 335 (349)
T ss_pred HHHHHHHHHC---CCCCCCCCCCCCEEEECCCC--------CHHHHHHHHHHCCCCHHHCCCCCCCCCCEEEEE---ECC
T ss_conf 8999999717---88755888876114545898--------688999998743410012057888887527888---528
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999999
Q gi|254780488|r 404 ATDLDHIYNTINE 416 (423)
Q Consensus 404 ~~eId~~l~~l~~ 416 (423)
T Consensus 336 ~a~N~rLlaALa~ 348 (349)
T TIGR01140 336 AAENDRLLAALAD 348 (349)
T ss_pred HHHHHHHHHHHHC
T ss_conf 5547899999613