HHsearch alignment for GI: 254780488 and conserved domain: TIGR03403
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PMID:11123951), so we use this designation.
Probab=99.46 E-value=3.6e-12 Score=102.36 Aligned_cols=337 Identities=14% Similarity=0.081 Sum_probs=177.8
Q ss_pred EEECHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHH-------HHHHHHCCCC-CCCEEECCCCCCHH
Q ss_conf 464102377536787899999999999985220102456897899999-------9999720378-64111026542025
Q gi|254780488|r 42 IIDAISSWWVITHGHRHPIIMNAIRSASENYDQIIFSEYTHEPAEQLA-------RLLIKIAPLG-LQYVFFSDSGSTSI 113 (423)
Q Consensus 42 ~lD~~~g~~~~~lGh~~~~i~~a~~~q~~~~~~~~~~~~~~~~~~~la-------~~l~~~~p~~-~~~v~f~~SGsEA~ 113 (423)
T Consensus 2 YLD~aAt------t~~~~~Vi~~~~~~~~~~~--~Np~s~h~~~~~a~~~~e~aR~~ia~~l~a~~~~eIvFTsg~Tea~ 73 (382)
T TIGR03403 2 YLDNNAT------TMLDPKVKELMDPFFCDIY--GNPNSLHQFGTATHPAIAEALDKLYKGINARDLDDIIITSCATESN 73 (382)
T ss_pred CCCCCCC------CCCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHH
T ss_conf 4637356------8999999999999998668--9963253999999999999999999975969978699938758999
Q ss_pred HHHHHH-HHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHCCC
Q ss_conf 677776-4300133443321134320256653211234322333333222344542100012222222111101221277
Q gi|254780488|r 114 EVALKM-ALGFFNNNNMPRNKIVVMEHGYHGDTIGSMSVSMRGAFNNSYEPLLFDVETIPFPHHNEEQKTLDDLEKHCST 192 (423)
Q Consensus 114 e~Alkl-ar~~~~~~~~~r~~ii~~~~~yHG~t~~a~s~s~~~~~~~~~~p~~~~~~~i~~~~~~~~~~~l~~l~~~~~~ 192 (423)
T Consensus 74 N~~~~gl~~~~~~--~~~~~~ii~s~-~EH~sv~--------~~~-~~l~~~G~~v~~~~~d~--~G~~d~~~l~~~l~~ 139 (382)
T TIGR03403 74 NWVLKGVYFDEIL--KGGKNHIITTE-VEHPAVR--------ATC-AFLESLGVEVTYLPINE--QGTITAEQVREAITE 139 (382)
T ss_pred HHHHHHHHHHHHH--CCCCCEEEEEC-CCCHHHH--------HHH-HHHHHCCCEEEEECCCC--CCCCCHHHHHHHCCC
T ss_conf 9999999999863--68999999955-6515389--------999-99996597899977599--985889999976014
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC-CCCCCCC
Q ss_conf 511343116554321122223332110011011123420001221244445554311223344442020134-4332223
Q gi|254780488|r 193 QKIAAFLVEPLILGAGGMQTYRPYILKEFMRITKKYDTLLIADEVMTGWGRTGKIFACNHADITPDILCLSK-GITGGAL 271 (423)
Q Consensus 193 ~~iaavi~EP~i~~~gG~~~~~~~~l~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~gi~PDi~~~gK-~l~gG~~ 271 (423)
T Consensus 140 ~T-~LVai~-~anN~tG~i~p----v~~I~~~~~~~g~~~~vDa~Q~-~g~~--pidv~~--l~~D~l~~S~HK~-~GP~ 207 (382)
T TIGR03403 140 KT-ALVSVM-WANNETGMIFP----IKEIGEICKERGVLFHTDAVQA-IGKI--PVDVQK--AGVDFLSFSAHKF-HGPK 207 (382)
T ss_pred CC-CEEEEE-CCCCCCCCCCC----HHHHHHHHHHCCCEEEEEHHHH-CCCC--CCCCCC--CCCCEEEEEHHHC-CCCC
T ss_conf 66-067763-14767777787----9999999987298799671341-3564--643232--3465245310103-6888
Q ss_pred CCCCCCCCHHHH-HHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHCCC--CCCCCCCCCHHHHHHHHHHHHHHCCCEE
Q ss_conf 444332240132-1000122222222333332222100110000000001--1233222100267898999975189777
Q gi|254780488|r 272 PLAATLCSEEIF-DSHLSSDKKKTFFHSSSYTANPIACAAALANLQIWEK--EPVIERIKNLERMHADRLSLLKSNKKFV 348 (423)
Q Consensus 272 pisav~~~~~i~-~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~--~~l~~~~~~~g~~l~~~l~~L~~~~~v~ 348 (423)
T Consensus 208 GiG~L~ir~~~~l~P~~~Gg~~~~~~r~GT~n--~~~i~~l~~A~~~~~~~~~~~~~~~~~L~~~l~~~L~~i~~~~i~g 285 (382)
T TIGR03403 208 GVGGLYIRKGVELTPLFHGGEHMGGRRSGTLN--VPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLEDALLELPDVFVVG 285 (382)
T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEC
T ss_conf 34999986777658765898774761279867--8899999999999999899999999999999999998177946716
Q ss_pred E--ECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCEEEEEC------------------------CCEEEECCCCCC
Q ss_conf 7--74553399999706876664106899999999788599951------------------------998995689878
Q gi|254780488|r 349 N--IRQMGTIVALDFNVQNKGYFFDKNAKLKNFFREKKILIRPL------------------------GHIMYLMPPYCI 402 (423)
Q Consensus 349 ~--vrG~Gl~~~iel~~~~~~~~~~~~~~l~~~l~~~Gil~~~~------------------------gn~i~l~Ppl~i 402 (423)
T Consensus 286 ~~~~r~p~-~~~~~~--~~i-----~~~~~~~~L~~~gI~v~~GsaCas~~~~~s~vl~a~g~~~~~~~~~vR~S~~~yn 357 (382)
T TIGR03403 286 DREHRVPN-TILISI--KGV-----EGEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFT 357 (382)
T ss_pred CHHHCCCC-EEEEEC--CCC-----CHHHHHHHHCCCCEEEECHHHHCCCCCCCCHHHHHCCCCHHHCCCEEEEECCCCC
T ss_conf 83325885-798627--998-----9899999847099799755772899887589999719985445957999758999
Q ss_pred CHHHHHHHHHHHHHHHHHHC
Q ss_conf 79999999999999998755
Q gi|254780488|r 403 TATDLDHIYNTINEAVDFLE 422 (423)
Q Consensus 403 t~~eId~~l~~l~~aL~~le 422 (423)
T Consensus 358 T~eeId~~i~~l~~~v~~lr 377 (382)
T TIGR03403 358 TEEEIDYTIEVFKKAVQRLR 377 (382)
T ss_pred CHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999998