HHsearch alignment for GI: 254780488 and conserved domain: TIGR03531

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=96.95  E-value=0.00081  Score=45.94  Aligned_cols=202  Identities=15%  Similarity=0.306  Sum_probs=108.0

Q ss_pred             CCCCCCCHHH---HHCCCCCEEEEECCCCCCCCCCCCCC-CCCCCCEEECCCCCCCCEECCCC---CCC---------CC
Q ss_conf             2221111012---21277511343116554321122223-33211001101112342000122---124---------44
Q gi|254780488|r  178 EEQKTLDDLE---KHCSTQKIAAFLVEPLILGAGGMQTY-RPYILKEFMRITKKYDTLLIADE---VMT---------GW  241 (423)
Q Consensus       178 ~~~~~l~~l~---~~~~~~~iaavi~EP~i~~~gG~~~~-~~~~l~~lr~lc~~~g~llI~DE---V~t---------G~  241 (423)
T Consensus       186 ~l~tdv~~ie~~i~~~g~~~i~cVlSTT---S---cFAPR~~D~i~eiAklC~~~~IpHvVNNAYGlQ~~~~~~~i~~A~  259 (444)
T TIGR03531       186 RLTTDVEDIERAIEEIGPENILCVLSTT---S---CFAPRSPDDIEEIAKICAKYDIPHVVNNAYGLQSNKYMEKINKAI  259 (444)
T ss_pred             EEECCHHHHHHHHHHHCCCCEEEEEECC---C---CCCCCCCCCHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHH
T ss_conf             7746999999999982867647998536---5---459999766999999999749983784203661799999999998


Q ss_pred             CCCCCCCCCCCCCCCCCEEE--CCCCCCCCCCCCCCCC-C--CHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCHH
Q ss_conf             45554311223344442020--1344332223444332-2--40132100012222222233333222210011000000
Q gi|254780488|r  242 GRTGKIFACNHADITPDILC--LSKGITGGALPLAATL-C--SEEIFDSHLSSDKKKTFFHSSSYTANPIACAAALANLQ  316 (423)
Q Consensus       242 GRtG~~~a~~~~gi~PDi~~--~gK~l~gG~~pisav~-~--~~~i~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~  316 (423)
T Consensus       260 -r~GRV----------Da~VQStDKNf---lVPVGGaII~s~d~~~i~~i-----------s~~YPGRA----S~sp~lD  310 (444)
T TIGR03531       260 -KVGRV----------DAVVSSTDKNF---MVPVGGAIIYSFDENFIQEI-----------SKSYPGRA----SASPSLD  310 (444)
T ss_pred             -HCCCC----------EEEEEECCCCE---EEECCCEEEEECCHHHHHHH-----------HHCCCCCC----CCCHHHH
T ss_conf             -64983----------19997068662---54348748971888999999-----------84189977----7740799


Q ss_pred             HCC------CCC---CCCCCCCHHHHHHHHHHHHHHCCC--EEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCE
Q ss_conf             000------112---332221002678989999751897--777745533999997068766641068999999997885
Q gi|254780488|r  317 IWE------KEP---VIERIKNLERMHADRLSLLKSNKK--FVNIRQMGTIVALDFNVQNKGYFFDKNAKLKNFFREKKI  385 (423)
Q Consensus       317 ~i~------~~~---l~~~~~~~g~~l~~~l~~L~~~~~--v~~vrG~Gl~~~iel~~~~~~~~~~~~~~l~~~l~~~Gi  385 (423)
T Consensus       311 lfITLLslG~~gy~~Ll~eRke~~~~l~~~L~~~a~~~gerlL~t~~N~IS~aitl~~l~~----~~~t~lGsmLf~r~V  386 (444)
T TIGR03531       311 VLITLLSMGSKGYLELLKERKEMYKYLKELLQKLAERHGERLLDVPENPISSAMTLNTLRP----KDPTMLGSMLYSRRV  386 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEEECCCCCC----CCHHHHHHHHHHCCC
T ss_conf             9999999748889999999999999999999999998298721489995057787366787----678999999973688


Q ss_pred             E---EEEC--------------C-C-------EEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             9---9951--------------9-9-------89956898787999999999999999
Q gi|254780488|r  386 L---IRPL--------------G-H-------IMYLMPPYCITATDLDHIYNTINEAV  418 (423)
Q Consensus       386 l---~~~~--------------g-n-------~i~l~Ppl~it~~eId~~l~~l~~aL  418 (423)
T Consensus       387 sG~RVV~~~~~k~i~g~~F~~~gsh~~~yp~~Ylt~aaaIG~~~~dvd~f~~rLdk~l  444 (444)
T TIGR03531       387 TGPRVVTNGDSKTVGGCEFKGYGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKSL  444 (444)
T ss_pred             CCCEEECCCCCEEECCEEEECCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf             7561775899738878775067777677852579988881885899999999986149