HHsearch alignment for GI: 254780488 and conserved domain: TIGR03531
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=96.95 E-value=0.00081 Score=45.94 Aligned_cols=202 Identities=15% Similarity=0.306 Sum_probs=108.0
Q ss_pred CCCCCCCHHH---HHCCCCCEEEEECCCCCCCCCCCCCC-CCCCCCEEECCCCCCCCEECCCC---CCC---------CC
Q ss_conf 2221111012---21277511343116554321122223-33211001101112342000122---124---------44
Q gi|254780488|r 178 EEQKTLDDLE---KHCSTQKIAAFLVEPLILGAGGMQTY-RPYILKEFMRITKKYDTLLIADE---VMT---------GW 241 (423)
Q Consensus 178 ~~~~~l~~l~---~~~~~~~iaavi~EP~i~~~gG~~~~-~~~~l~~lr~lc~~~g~llI~DE---V~t---------G~ 241 (423)
T Consensus 186 ~l~tdv~~ie~~i~~~g~~~i~cVlSTT---S---cFAPR~~D~i~eiAklC~~~~IpHvVNNAYGlQ~~~~~~~i~~A~ 259 (444)
T TIGR03531 186 RLTTDVEDIERAIEEIGPENILCVLSTT---S---CFAPRSPDDIEEIAKICAKYDIPHVVNNAYGLQSNKYMEKINKAI 259 (444)
T ss_pred EEECCHHHHHHHHHHHCCCCEEEEEECC---C---CCCCCCCCCHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHH
T ss_conf 7746999999999982867647998536---5---459999766999999999749983784203661799999999998
Q ss_pred CCCCCCCCCCCCCCCCCEEE--CCCCCCCCCCCCCCCC-C--CHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCHH
Q ss_conf 45554311223344442020--1344332223444332-2--40132100012222222233333222210011000000
Q gi|254780488|r 242 GRTGKIFACNHADITPDILC--LSKGITGGALPLAATL-C--SEEIFDSHLSSDKKKTFFHSSSYTANPIACAAALANLQ 316 (423)
Q Consensus 242 GRtG~~~a~~~~gi~PDi~~--~gK~l~gG~~pisav~-~--~~~i~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~ 316 (423)
T Consensus 260 -r~GRV----------Da~VQStDKNf---lVPVGGaII~s~d~~~i~~i-----------s~~YPGRA----S~sp~lD 310 (444)
T TIGR03531 260 -KVGRV----------DAVVSSTDKNF---MVPVGGAIIYSFDENFIQEI-----------SKSYPGRA----SASPSLD 310 (444)
T ss_pred -HCCCC----------EEEEEECCCCE---EEECCCEEEEECCHHHHHHH-----------HHCCCCCC----CCCHHHH
T ss_conf -64983----------19997068662---54348748971888999999-----------84189977----7740799
Q ss_pred HCC------CCC---CCCCCCCHHHHHHHHHHHHHHCCC--EEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCE
Q ss_conf 000------112---332221002678989999751897--777745533999997068766641068999999997885
Q gi|254780488|r 317 IWE------KEP---VIERIKNLERMHADRLSLLKSNKK--FVNIRQMGTIVALDFNVQNKGYFFDKNAKLKNFFREKKI 385 (423)
Q Consensus 317 ~i~------~~~---l~~~~~~~g~~l~~~l~~L~~~~~--v~~vrG~Gl~~~iel~~~~~~~~~~~~~~l~~~l~~~Gi 385 (423)
T Consensus 311 lfITLLslG~~gy~~Ll~eRke~~~~l~~~L~~~a~~~gerlL~t~~N~IS~aitl~~l~~----~~~t~lGsmLf~r~V 386 (444)
T TIGR03531 311 VLITLLSMGSKGYLELLKERKEMYKYLKELLQKLAERHGERLLDVPENPISSAMTLNTLRP----KDPTMLGSMLYSRRV 386 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEEECCCCCC----CCHHHHHHHHHHCCC
T ss_conf 9999999748889999999999999999999999998298721489995057787366787----678999999973688
Q ss_pred E---EEEC--------------C-C-------EEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9---9951--------------9-9-------89956898787999999999999999
Q gi|254780488|r 386 L---IRPL--------------G-H-------IMYLMPPYCITATDLDHIYNTINEAV 418 (423)
Q Consensus 386 l---~~~~--------------g-n-------~i~l~Ppl~it~~eId~~l~~l~~aL 418 (423)
T Consensus 387 sG~RVV~~~~~k~i~g~~F~~~gsh~~~yp~~Ylt~aaaIG~~~~dvd~f~~rLdk~l 444 (444)
T TIGR03531 387 TGPRVVTNGDSKTVGGCEFKGYGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKSL 444 (444)
T ss_pred CCCEEECCCCCEEECCEEEECCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf 7561775899738878775067777677852579988881885899999999986149