HHsearch alignment for GI: 254780488 and conserved domain: TIGR03540
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=99.59 E-value=6e-13 Score=107.57 Aligned_cols=333 Identities=15% Similarity=0.133 Sum_probs=182.2
Q ss_pred CCCCEEEECHHHHHHHCCCCCCHHHHHHHHHHHHHHCC--HHCCCCCCHHHHHHHHHHHHHCCCCC--C-CEEECCCCCC
Q ss_conf 89876464102377536787899999999999985220--10245689789999999997203786--4-1110265420
Q gi|254780488|r 37 ENHDKIIDAISSWWVITHGHRHPIIMNAIRSASENYDQ--IIFSEYTHEPAEQLARLLIKIAPLGL--Q-YVFFSDSGST 111 (423)
Q Consensus 37 ~dG~~~lD~~~g~~~~~lGh~~~~i~~a~~~q~~~~~~--~~~~~~~~~~~~~la~~l~~~~p~~~--~-~v~f~~SGsE 111 (423)
T Consensus 26 ~~G~dvi~l~ig~pd--f-~~p~~i~~a~~~a~~~~~~~~Y~~~~G~~~lreaia~~~~~~~g~~~~p~~~vi~t~Ga~~ 102 (383)
T TIGR03540 26 AEGVDVISLGIGDPD--L-PTPKHIVEALCKAAENPENHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKE 102 (383)
T ss_pred HCCCCEEECCCCCCC--C-CCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHH
T ss_conf 569985888899899--9-9899999999999828887654998784999999999999986898996766998478259
Q ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHCC
Q ss_conf 25677776430013344332113432025665321123432233333322234454210001222222211110122127
Q gi|254780488|r 112 SIEVALKMALGFFNNNNMPRNKIVVMEHGYHGDTIGSMSVSMRGAFNNSYEPLLFDVETIPFPHHNEEQKTLDDLEKHCS 191 (423)
Q Consensus 112 A~e~Alklar~~~~~~~~~r~~ii~~~~~yHG~t~~a~s~s~~~~~~~~~~p~~~~~~~i~~~~~~~~~~~l~~l~~~~~ 191 (423)
T Consensus 103 al~~~~~~l~-------~pGD~Vli~~P~Y~~y~~~~~~~g~~-------------~v~vpl~~~~~~~~d~e~l~~~~~ 162 (383)
T TIGR03540 103 GIAHIPLAFV-------NPGDIVLVPDPGYPVYRIGTLFAGGE-------------PYEMPLKEENGFLPDFDAIPEDIA 162 (383)
T ss_pred HHHHHHHHHC-------CCCCEEEECCCCCCCHHHHHHHCCCE-------------EEEEECCCCCCCCCCHHHHHHHCC
T ss_conf 9999999966-------89898998789860169999971985-------------899613357798579999987452
Q ss_pred CCCEEEEEC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCC-CCCCCCCCCC----EEECCCC
Q ss_conf 751134311-655432112222333211001101112342000122124444555431-1223344442----0201344
Q gi|254780488|r 192 TQKIAAFLV-EPLILGAGGMQTYRPYILKEFMRITKKYDTLLIADEVMTGWGRTGKIF-ACNHADITPD----ILCLSKG 265 (423)
Q Consensus 192 ~~~iaavi~-EP~i~~~gG~~~~~~~~l~~lr~lc~~~g~llI~DEV~tG~GRtG~~~-a~~~~gi~PD----i~~~gK~ 265 (423)
T Consensus 163 ~-~~k~iil~~P--~NPTG~v~-s~~~l~~i~~la~~~~i~iIsDEiY~~l~~~~~~~~s~~~~~~~~~~~i~~~S~SK~ 238 (383)
T TIGR03540 163 K-KAKLMFINYP--NNPTGAVA-PLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKT 238 (383)
T ss_pred C-CCEEEEECCC--CCCCCCCC-CCHHHHCCCCCCCCCCCEEECCHHHHHHCCCCCCCCCCEECCCCCCEEEEEEECCCC
T ss_conf 3-7749998999--89707012-102222010012455405761102555303899997711136655425776302354
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHCCCCCCCCCCCC----HHHHHHHHHHHH
Q ss_conf 3322234443322401321000122222222333332222100110000000001123322210----026789899997
Q gi|254780488|r 266 ITGGALPLAATLCSEEIFDSHLSSDKKKTFFHSSSYTANPIACAAALANLQIWEKEPVIERIKN----LERMHADRLSLL 341 (423)
Q Consensus 266 l~gG~~pisav~~~~~i~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~----~g~~l~~~l~~L 341 (423)
T Consensus 239 ~~~~G~RiG~~i~~~~l~~~~~~~~~---~~~~~~~--~~~q-~a~~~al~~~--~~~~~~~~~~~~~~r~~~~~~---L 307 (383)
T TIGR03540 239 YNMTGWRIGMAVGNADLIAGLGKVKT---NVDSGVF--QAIQ-YAAIAALNGP--QDVVKEIRKIYQRRRDLLLEA---L 307 (383)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHH---HHCCCCC--HHHH-HHHHHHHHCH--HHHHHHHHHHHHHHHHHHHHH---H
T ss_conf 47887348962289999999999975---5135676--5999-9999998591--999999999999999999999---9
Q ss_pred HHCCCEEEECCCCCEEE-EEECCCCCCCCCHHHHHHHHHH-HHCCEEEEECC-------CEEEECCCCCCCHHHHHHHHH
Q ss_conf 51897777745533999-9970687666410689999999-97885999519-------989956898787999999999
Q gi|254780488|r 342 KSNKKFVNIRQMGTIVA-LDFNVQNKGYFFDKNAKLKNFF-REKKILIRPLG-------HIMYLMPPYCITATDLDHIYN 412 (423)
Q Consensus 342 ~~~~~v~~vrG~Gl~~~-iel~~~~~~~~~~~~~~l~~~l-~~~Gil~~~~g-------n~i~l~Ppl~it~~eId~~l~ 412 (423)
T Consensus 308 ~~~-g~~~~~p~g~~~~w~~~--~~---~~-~~~~~~~~ll~~~gV~v~PG~~Fg~~g~~~iRl~--~~~~~e~l~eal~ 378 (383)
T TIGR03540 308 KKI-GIDVEKPKATFYVWVPV--PE---GY-TSAEFAARLLEETGVVVTPGVGFGEYGEGYIRIS--LTVPDERLEEAVA 378 (383)
T ss_pred HHC-CCEEECCCCEEEEEEEC--CC---CC-CHHHHHHHHHHHCCEEEECCHHHCCCCCCEEEEE--EECCHHHHHHHHH
T ss_conf 876-98773578057998989--99---98-9899999999839999988853288998869999--8699999999999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780488|r 413 TINE 416 (423)
Q Consensus 413 ~l~~ 416 (423)
T Consensus 379 RL~k 382 (383)
T TIGR03540 379 RIKK 382 (383)
T ss_pred HHHC
T ss_conf 9844