HHsearch alignment for GI: 254780488 and conserved domain: TIGR03540

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=99.59  E-value=6e-13  Score=107.57  Aligned_cols=333  Identities=15%  Similarity=0.133  Sum_probs=182.2

Q ss_pred             CCCCEEEECHHHHHHHCCCCCCHHHHHHHHHHHHHHCC--HHCCCCCCHHHHHHHHHHHHHCCCCC--C-CEEECCCCCC
Q ss_conf             89876464102377536787899999999999985220--10245689789999999997203786--4-1110265420
Q gi|254780488|r   37 ENHDKIIDAISSWWVITHGHRHPIIMNAIRSASENYDQ--IIFSEYTHEPAEQLARLLIKIAPLGL--Q-YVFFSDSGST  111 (423)
Q Consensus        37 ~dG~~~lD~~~g~~~~~lGh~~~~i~~a~~~q~~~~~~--~~~~~~~~~~~~~la~~l~~~~p~~~--~-~v~f~~SGsE  111 (423)
T Consensus        26 ~~G~dvi~l~ig~pd--f-~~p~~i~~a~~~a~~~~~~~~Y~~~~G~~~lreaia~~~~~~~g~~~~p~~~vi~t~Ga~~  102 (383)
T TIGR03540        26 AEGVDVISLGIGDPD--L-PTPKHIVEALCKAAENPENHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKE  102 (383)
T ss_pred             HCCCCEEECCCCCCC--C-CCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHH
T ss_conf             569985888899899--9-9899999999999828887654998784999999999999986898996766998478259


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHCC
Q ss_conf             25677776430013344332113432025665321123432233333322234454210001222222211110122127
Q gi|254780488|r  112 SIEVALKMALGFFNNNNMPRNKIVVMEHGYHGDTIGSMSVSMRGAFNNSYEPLLFDVETIPFPHHNEEQKTLDDLEKHCS  191 (423)
Q Consensus       112 A~e~Alklar~~~~~~~~~r~~ii~~~~~yHG~t~~a~s~s~~~~~~~~~~p~~~~~~~i~~~~~~~~~~~l~~l~~~~~  191 (423)
T Consensus       103 al~~~~~~l~-------~pGD~Vli~~P~Y~~y~~~~~~~g~~-------------~v~vpl~~~~~~~~d~e~l~~~~~  162 (383)
T TIGR03540       103 GIAHIPLAFV-------NPGDIVLVPDPGYPVYRIGTLFAGGE-------------PYEMPLKEENGFLPDFDAIPEDIA  162 (383)
T ss_pred             HHHHHHHHHC-------CCCCEEEECCCCCCCHHHHHHHCCCE-------------EEEEECCCCCCCCCCHHHHHHHCC
T ss_conf             9999999966-------89898998789860169999971985-------------899613357798579999987452


Q ss_pred             CCCEEEEEC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCC-CCCCCCCCCC----EEECCCC
Q ss_conf             751134311-655432112222333211001101112342000122124444555431-1223344442----0201344
Q gi|254780488|r  192 TQKIAAFLV-EPLILGAGGMQTYRPYILKEFMRITKKYDTLLIADEVMTGWGRTGKIF-ACNHADITPD----ILCLSKG  265 (423)
Q Consensus       192 ~~~iaavi~-EP~i~~~gG~~~~~~~~l~~lr~lc~~~g~llI~DEV~tG~GRtG~~~-a~~~~gi~PD----i~~~gK~  265 (423)
T Consensus       163 ~-~~k~iil~~P--~NPTG~v~-s~~~l~~i~~la~~~~i~iIsDEiY~~l~~~~~~~~s~~~~~~~~~~~i~~~S~SK~  238 (383)
T TIGR03540       163 K-KAKLMFINYP--NNPTGAVA-PLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKT  238 (383)
T ss_pred             C-CCEEEEECCC--CCCCCCCC-CCHHHHCCCCCCCCCCCEEECCHHHHHHCCCCCCCCCCEECCCCCCEEEEEEECCCC
T ss_conf             3-7749998999--89707012-102222010012455405761102555303899997711136655425776302354


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHCCCCCCCCCCCC----HHHHHHHHHHHH
Q ss_conf             3322234443322401321000122222222333332222100110000000001123322210----026789899997
Q gi|254780488|r  266 ITGGALPLAATLCSEEIFDSHLSSDKKKTFFHSSSYTANPIACAAALANLQIWEKEPVIERIKN----LERMHADRLSLL  341 (423)
Q Consensus       266 l~gG~~pisav~~~~~i~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~----~g~~l~~~l~~L  341 (423)
T Consensus       239 ~~~~G~RiG~~i~~~~l~~~~~~~~~---~~~~~~~--~~~q-~a~~~al~~~--~~~~~~~~~~~~~~r~~~~~~---L  307 (383)
T TIGR03540       239 YNMTGWRIGMAVGNADLIAGLGKVKT---NVDSGVF--QAIQ-YAAIAALNGP--QDVVKEIRKIYQRRRDLLLEA---L  307 (383)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHH---HHCCCCC--HHHH-HHHHHHHHCH--HHHHHHHHHHHHHHHHHHHHH---H
T ss_conf             47887348962289999999999975---5135676--5999-9999998591--999999999999999999999---9


Q ss_pred             HHCCCEEEECCCCCEEE-EEECCCCCCCCCHHHHHHHHHH-HHCCEEEEECC-------CEEEECCCCCCCHHHHHHHHH
Q ss_conf             51897777745533999-9970687666410689999999-97885999519-------989956898787999999999
Q gi|254780488|r  342 KSNKKFVNIRQMGTIVA-LDFNVQNKGYFFDKNAKLKNFF-REKKILIRPLG-------HIMYLMPPYCITATDLDHIYN  412 (423)
Q Consensus       342 ~~~~~v~~vrG~Gl~~~-iel~~~~~~~~~~~~~~l~~~l-~~~Gil~~~~g-------n~i~l~Ppl~it~~eId~~l~  412 (423)
T Consensus       308 ~~~-g~~~~~p~g~~~~w~~~--~~---~~-~~~~~~~~ll~~~gV~v~PG~~Fg~~g~~~iRl~--~~~~~e~l~eal~  378 (383)
T TIGR03540       308 KKI-GIDVEKPKATFYVWVPV--PE---GY-TSAEFAARLLEETGVVVTPGVGFGEYGEGYIRIS--LTVPDERLEEAVA  378 (383)
T ss_pred             HHC-CCEEECCCCEEEEEEEC--CC---CC-CHHHHHHHHHHHCCEEEECCHHHCCCCCCEEEEE--EECCHHHHHHHHH
T ss_conf             876-98773578057998989--99---98-9899999999839999988853288998869999--8699999999999


Q ss_pred             HHHH
Q ss_conf             9999
Q gi|254780488|r  413 TINE  416 (423)
Q Consensus       413 ~l~~  416 (423)
T Consensus       379 RL~k  382 (383)
T TIGR03540       379 RIKK  382 (383)
T ss_pred             HHHC
T ss_conf             9844