HHsearch alignment for GI: 254780488 and conserved domain: TIGR03576
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=94.85 E-value=0.27 Score=28.93 Aligned_cols=182 Identities=14% Similarity=0.190 Sum_probs=101.8
Q ss_pred CCCCCCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCCC-CCCCCCCEEE--CCCCCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 22333211001101112342000122124444555431122-3344442020--13443322234443322401321000
Q gi|254780488|r 211 QTYRPYILKEFMRITKKYDTLLIADEVMTGWGRTGKIFACN-HADITPDILC--LSKGITGGALPLAATLCSEEIFDSHL 287 (423)
Q Consensus 211 ~~~~~~~l~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~~-~~gi~PDi~~--~gK~l~gG~~pisav~~~~~i~~~~~ 287 (423)
T Consensus 150 ~vi~~d~~k~vI~~Ak~~~a~V~vDDA-sGA-RvR~L~gq~~al~lGADLvVTS~DKlM~G--PR~GlLaG~~eLV~ki~ 225 (346)
T TIGR03576 150 KVVSEEDLKRVIKQAKSKEAIVLVDDA-SGA-RVRRLYGQPPALDLGADLVVTSTDKLMDG--PRGGLLAGRKELVDKIK 225 (346)
T ss_pred EECCHHHHHHHHHHHHHCCCEEEEECC-CCC-CHHHHCCCCCCCCCCCCEEEEEHHHCCCC--CCCCEECCCHHHHHHHH
T ss_conf 004578899999998746984998548-887-51665199986555642688400212667--75411228889999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCEE-EEEECCCCC
Q ss_conf 1222222223333322221001100000000011233222100267898999975189777774553399-999706876
Q gi|254780488|r 288 SSDKKKTFFHSSSYTANPIACAAALANLQIWEKEPVIERIKNLERMHADRLSLLKSNKKFVNIRQMGTIV-ALDFNVQNK 366 (423)
Q Consensus 288 ~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~l~~L~~~~~v~~vrG~Gl~~-~iel~~~~~ 366 (423)
T Consensus 226 ~~~~----~~GlE--aq~Pi~aAmv~aLe~f~~~~l~~a~~r~~~~~l~~~~~l~----~-e~TptGf~ik~~~------ 288 (346)
T TIGR03576 226 SVGE----QFGLE--AQAPLLAAVVRALEEFELSRIRDAFKRKEEVYLRLFDKLN----V-ERTPTGFVIKGVE------ 288 (346)
T ss_pred HHHH----HCCCC--CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC----C-CCCCCEEEEECCC------
T ss_conf 9987----52777--7841599999999707999999999999998876530357----4-3278537985656------
Q ss_pred CCCCHHHH-HHHHHHHHCCEEEEEC------CCEEEECCCCCCCHHH---HHHHHHHHHHHH
Q ss_conf 66410689-9999999788599951------9989956898787999---999999999999
Q gi|254780488|r 367 GYFFDKNA-KLKNFFREKKILIRPL------GHIMYLMPPYCITATD---LDHIYNTINEAV 418 (423)
Q Consensus 367 ~~~~~~~~-~l~~~l~~~Gil~~~~------gn~i~l~Ppl~it~~e---Id~~l~~l~~aL 418 (423)
T Consensus 289 ---~e~~~~~~~~LL~~ygIiTIta~GmpgasktlR~d~--~skDAeri~~~~~v~av~~s~ 345 (346)
T TIGR03576 289 ---EEKLIEIGLDLLRNYGIITITAVGMPGASKTLRFDL--AAKDAERIGDDYLVEAVKDSL 345 (346)
T ss_pred ---HHHHHHHHHHHHHHCCEEEEECCCCCCCCCEEEEEE--ECCCHHHHCHHHHHHHHHHHC
T ss_conf ---888899999999976948983477888763268762--025165515799999998541