HHsearch alignment for GI: 254780488 and conserved domain: cd00378
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=98.14 E-value=0.00033 Score=48.56 Aligned_cols=268 Identities=18% Similarity=0.195 Sum_probs=128.3
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCC-CCC---CCCCCCCCCCCCCCCCCCCCCCCEECCCCC-CCC
Q ss_conf 265420256777764300133443321134320256653-211---234322333333222344542100012222-222
Q gi|254780488|r 106 SDSGSTSIEVALKMALGFFNNNNMPRNKIVVMEHGYHGD-TIG---SMSVSMRGAFNNSYEPLLFDVETIPFPHHN-EEQ 180 (423)
Q Consensus 106 ~~SGsEA~e~Alklar~~~~~~~~~r~~ii~~~~~yHG~-t~~---a~s~s~~~~~~~~~~p~~~~~~~i~~~~~~-~~~ 180 (423)
T Consensus 87 p~SGs~AN~av~~al-------l~pGD~il~l~l~~GGHltHg~~~~v~~~g~------------~~~~~~Y~vd~~~~~ 147 (402)
T cd00378 87 PHSGSQANLAVYFAL-------LEPGDTIMGLDLSHGGHLTHGSFTKVSASGK------------LFESVPYGVDPETGL 147 (402)
T ss_pred CCCHHHHHHHHHHHH-------HCCCCEEEEECCCCCCCCCCCCCCCCEEEEE------------EEEEEECCCCCCCCC
T ss_conf 787399999999997-------2799989986643477756677877202135------------678896324556587
Q ss_pred CCCCHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECCCCCC-CCCCCCCCCCCCCCCCCCCCE
Q ss_conf 1111012212775113431165543211222233321100110111234200012212-444455543112233444420
Q gi|254780488|r 181 KTLDDLEKHCSTQKIAAFLVEPLILGAGGMQTYRPYILKEFMRITKKYDTLLIADEVM-TGWGRTGKIFACNHADITPDI 259 (423)
Q Consensus 181 ~~l~~l~~~~~~~~iaavi~EP~i~~~gG~~~~~~~~l~~lr~lc~~~g~llI~DEV~-tG~GRtG~~~a~~~~gi~PDi 259 (423)
T Consensus 148 IDyd~~~~~a~~~kPklIi~-----G~S-~y~r~~d-~~~~reIad~vgA~l~~D~aHi~GL-IA~g~~p~P-l~-~ADv 217 (402)
T cd00378 148 IDYDALEKMALEFKPKLIVA-----GAS-AYPRPID-FKRFREIADEVGAYLLVDMAHVAGL-VAGGVFPNP-LP-GADV 217 (402)
T ss_pred CCHHHHHHHHHHCCCCEEEE-----CCC-CCCCCCC-HHHHHHHHHHCCCEEEEEHHHHHHH-EECCCCCCC-CC-CCEE
T ss_conf 18999999998659969997-----771-5656558-8999999987098898550123443-035657997-68-7657
Q ss_pred EECC--CCCCCCCCCCCCCCCC-H-HHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHC-CHHHCCCCC---CCCCCCCHH
Q ss_conf 2013--4433222344433224-0-132100012222222233333222210011000-000000112---332221002
Q gi|254780488|r 260 LCLS--KGITGGALPLAATLCS-E-EIFDSHLSSDKKKTFFHSSSYTANPIACAAALA-NLQIWEKEP---VIERIKNLE 331 (423)
Q Consensus 260 ~~~g--K~l~gG~~pisav~~~-~-~i~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a-~L~~i~~~~---l~~~~~~~g 331 (423)
T Consensus 218 vt~tTHKTlrG---PrGGiIl~~~~~~~~kId~a--vfPg----~qggph~h~iAa~Aval~Ea~~~~f~~Ya~qVv~NA 288 (402)
T cd00378 218 VTTTTHKTLRG---PRGGLILTRKGELAKKINSA--VFPG----LQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENA 288 (402)
T ss_pred EECCCCCCCCC---CCCEEEEECCHHHHHHHHHH--HCCC----CCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_conf 74464345789---98408995427899885465--0986----446745667899999999986866899999999999
Q ss_pred HHHHHHHHHHHHCC-CEEEECCCCC-EEEEEECCCCCCCCCHHHHHHHHHHHHCCEEEEE----CC-------CEEEECC
Q ss_conf 67898999975189-7777745533-9999970687666410689999999978859995----19-------9899568
Q gi|254780488|r 332 RMHADRLSLLKSNK-KFVNIRQMGT-IVALDFNVQNKGYFFDKNAKLKNFFREKKILIRP----LG-------HIMYLMP 398 (423)
Q Consensus 332 ~~l~~~l~~L~~~~-~v~~vrG~Gl-~~~iel~~~~~~~~~~~~~~l~~~l~~~Gil~~~----~g-------n~i~l~P 398 (423)
T Consensus 289 kaLA~~L~---~~G~~vv~-ggTd~H~vlvd~~~~g-----~~G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~sGiRiGT 359 (402)
T cd00378 289 KALAEALK---ERGFKVVS-GGTDNHLVLVDLRPKG-----ITGKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGT 359 (402)
T ss_pred HHHHHHHH---HCCCEEEC-CCCCCCEEEEECCCCC-----CCHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCEEECC
T ss_conf 99999998---58947974-8998877999666456-----899999999998490875474889999999997616477
Q ss_pred CCC----CCHHHHHHHHHHHHHHHHH
Q ss_conf 987----8799999999999999987
Q gi|254780488|r 399 PYC----ITATDLDHIYNTINEAVDF 420 (423)
Q Consensus 399 pl~----it~~eId~~l~~l~~aL~~ 420 (423)
T Consensus 360 ~a~T~rG~~e~em~~ia~lI~~~l~~ 385 (402)
T cd00378 360 PAMTTRGMGEEEMEEIADFIARALKD 385 (402)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHC
T ss_conf 89985899889999999999999817