HHsearch alignment for GI: 254780488 and conserved domain: cd00613
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=98.62 E-value=9.4e-07 Score=65.77 Aligned_cols=329 Identities=19% Similarity=0.208 Sum_probs=174.6
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHCCHHCCCCCC-------HHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHH
Q ss_conf 237753678789999999999998522010245689-------7899999999972037864111026542025677776
Q gi|254780488|r 47 SSWWVITHGHRHPIIMNAIRSASENYDQIIFSEYTH-------EPAEQLARLLIKIAPLGLQYVFFSDSGSTSIEVALKM 119 (423)
Q Consensus 47 ~g~~~~~lGh~~~~i~~a~~~q~~~~~~~~~~~~~~-------~~~~~la~~l~~~~p~~~~~v~f~~SGsEA~e~Alkl 119 (423)
T Consensus 23 ~flG~g~y~h~~p~~v~~~~~r~e-f~t-~ytpyq~E~sQG~Lq~~~e~Qs~i~eLtGmdv~naSl~d~a~A~aEa~~ma 100 (398)
T cd00613 23 SFLGSGTYKHNPPAVIKRNILENE-FYT-AYTPYQPEISQGRLQALFELQTMLCELTGMDVANASLQDEATAAAEAAGLA 100 (398)
T ss_pred CCCCCCCCCCCCHHHHHHHHCHHH-HHH-CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 567460256233889898738676-714-699989688699999999999999998688835632687677999999999
Q ss_pred HH-HCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHCCCCCEEEE
Q ss_conf 43-00133443321134320256653211234322333333222344542100012222222111101221277511343
Q gi|254780488|r 120 AL-GFFNNNNMPRNKIVVMEHGYHGDTIGSMSVSMRGAFNNSYEPLLFDVETIPFPHHNEEQKTLDDLEKHCSTQKIAAF 198 (423)
Q Consensus 120 ar-~~~~~~~~~r~~ii~~~~~yHG~t~~a~s~s~~~~~~~~~~p~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~iaav 198 (423)
T Consensus 101 ~~~~~-----~~r~~vlv-~~~~hp~~~~v~~t~~--------~~~g~~i~~v~~~--~~G~~d~~~l~~~~~-~~~a~v 163 (398)
T cd00613 101 AIRAY-----HKRNKVLV-PDSAHPTNPAVARTRG--------EPLGIEVVEVPSD--EGGTVDLEALKEEVS-EEVAAL 163 (398)
T ss_pred HHHHH-----CCCCEEEE-CCCCCCCHHHHHHHHH--------HCCCCEEEEECCC--CCCCCCHHHHHHHCC-CCEEEE
T ss_conf 99862-----68998997-7877803699999986--------1258658994266--677746588887507-885999
Q ss_pred ECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECCCCCC---CCCCCCCCCCCCCCCCCCCCEE-----ECCCCCCCCC
Q ss_conf 1165543211222233321100110111234200012212---4444555431122334444202-----0134433222
Q gi|254780488|r 199 LVEPLILGAGGMQTYRPYILKEFMRITKKYDTLLIADEVM---TGWGRTGKIFACNHADITPDIL-----CLSKGITGGA 270 (423)
Q Consensus 199 i~EP~i~~~gG~~~~~~~~l~~lr~lc~~~g~llI~DEV~---tG~GRtG~~~a~~~~gi~PDi~-----~~gK~l~gG~ 270 (423)
T Consensus 164 ~v~~-P-n~~G~~---e~~~~~i~~~~h~~gal~~~~~~~~~l~~l~~Pg~~G--------aDI~~g~~q~~g~P~~~GG 230 (398)
T cd00613 164 MVQY-P-NTLGVF---EDLIKEIADIAHSAGALVYVDGDNLNLTGLKPPGEYG--------ADIVVGNLQKTGVPHGGGG 230 (398)
T ss_pred EECC-C-CCCEEE---ECCHHHHHHHHHHCCCEEEEEECCHHHHCCCCCCCCC--------CCEEEECCCCCCCCCCCCC
T ss_conf 9527-9-996278---5199999999987598699974403531555710047--------8779852511466566688
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCC---------CC--------CC-------CCCCCCCCCCHHHHHCCHHHCCCCCCC--
Q ss_conf 34443322401321000122222---------22--------23-------333322221001100000000011233--
Q gi|254780488|r 271 LPLAATLCSEEIFDSHLSSDKKK---------TF--------FH-------SSSYTANPIACAAALANLQIWEKEPVI-- 324 (423)
Q Consensus 271 ~pisav~~~~~i~~~~~~~~~~~---------~~--------~h-------~~T~~gnpl~~aaa~a~L~~i~~~~l~-- 324 (423)
T Consensus 231 -P~~G~~a~~~~l~r~lPgrivg~t~D~~G~~~~~ltlqtreqhIrRekatsnict~qal~al~a~~Y~~~lG~~GL~~v 309 (398)
T cd00613 231 -PGAGFFAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLGPEGLKEI 309 (398)
T ss_pred -CCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf -7443266799877358998565047888874215441354333677752881643278999999999998488638899
Q ss_pred -CCCCCHHHHHHHHHHHHHHCCCEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCEEEE----ECCCEEEECCC
Q ss_conf -2221002678989999751897777745533999997068766641068999999997885999----51998995689
Q gi|254780488|r 325 -ERIKNLERMHADRLSLLKSNKKFVNIRQMGTIVALDFNVQNKGYFFDKNAKLKNFFREKKILIR----PLGHIMYLMPP 399 (423)
Q Consensus 325 -~~~~~~g~~l~~~l~~L~~~~~v~~vrG~Gl~~~iel~~~~~~~~~~~~~~l~~~l~~~Gil~~----~~gn~i~l~Pp 399 (423)
T Consensus 310 a~~~~~~A~Yl~~~L~~~~---~~~-~~~~~~f~EFvi~~~--~~~~~~~~~l~k~~i~~G~~~~~~y~~~~~~lli~~T 383 (398)
T cd00613 310 AERAHLNANYLAKRLKEVG---GVL-PFNGPFFHEFVLRLP--PLYGIRAEDLAKALIDGGFHAPTMYLPVDGTLMIEPT 383 (398)
T ss_pred HHHHHHHHHHHHHHHHHCC---CCC-CCCCCEEEEEEEECC--CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC
T ss_conf 9999999999999998638---982-689986669999768--7547689999973621582866468888997999805
Q ss_pred CCCCHHHHHHHHHHH
Q ss_conf 878799999999999
Q gi|254780488|r 400 YCITATDLDHIYNTI 414 (423)
Q Consensus 400 l~it~~eId~~l~~l 414 (423)
T Consensus 384 E~~skediD~l~~aL 398 (398)
T cd00613 384 ETETKEELDALLEAL 398 (398)
T ss_pred CCCCHHHHHHHHHHC
T ss_conf 899999999999749