HHsearch alignment for GI: 254780488 and conserved domain: pfam03841
>pfam03841 SelA L-seryl-tRNA selenium transferase.
Probab=97.82 E-value=0.00087 Score=45.74 Aligned_cols=300 Identities=15% Similarity=0.189 Sum_probs=148.5
Q ss_pred HCCCCC--CHHHHHHHHHHHHHHCCH---HCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 367878--999999999999852201---024568978999999999720378641110265420256777764300133
Q gi|254780488|r 52 ITHGHR--HPIIMNAIRSASENYDQI---IFSEYTHEPAEQLARLLIKIAPLGLQYVFFSDSGSTSIEVALKMALGFFNN 126 (423)
Q Consensus 52 ~~lGh~--~~~i~~a~~~q~~~~~~~---~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~SGsEA~e~Alklar~~~~~ 126 (423)
T Consensus 11 TnLGRa~l~~~a~~a~~~~~~~y~nLE~dl~~g~RG~R~~~~~~ll~~lt--gaE~a~vVNnnAaAv~L~l~~l------ 82 (367)
T pfam03841 11 TNLGRALLSEEAVEAAKEAARHYSNLEYDLESGKRGSRDSHLEELLCELT--GAEDALVVNNNAAAVLLVLNTL------ 82 (367)
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHH--CCCEEEEECCCHHHHHHHHHHH------
T ss_conf 67877789999999999986177203666741776635789999999863--9865999878389999999987------
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHCCCCCEEEEEC-CCCCC
Q ss_conf 44332113432025665321123432233333322234454210001222222211110122127751134311-65543
Q gi|254780488|r 127 NNMPRNKIVVMEHGYHGDTIGSMSVSMRGAFNNSYEPLLFDVETIPFPHHNEEQKTLDDLEKHCSTQKIAAFLV-EPLIL 205 (423)
Q Consensus 127 ~~~~r~~ii~~~~~yHG~t~~a~s~s~~~~~~~~~~p~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~iaavi~-EP~i~ 205 (423)
T Consensus 83 -a~g~evivSRGelV--------eiGg--sfRiPdim~~sGa~LvEVGtTN--rT~l~DYe~AI~e~T-a~llkVH~--- 145 (367)
T pfam03841 83 -AQGKEVIISRGELV--------EIGG--SFRIPDIMKQSGARLVEVGTTN--RTHLKDYEQAINENT-ALLMKVHT--- 145 (367)
T ss_pred -HCCCCEEEECCEEE--------CCCC--CCCCHHHHHHCCCEEEEECCCC--CCCHHHHHHHCCCCC-EEEEEEEC---
T ss_conf -54890577555451--------2387--5440899996597899825668--889899998708246-18999942---
Q ss_pred CCCCCC--CCCCCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCC------------CCCEEECC--CCCCCC
Q ss_conf 211222--23332110011011123420001221244445554311223344------------44202013--443322
Q gi|254780488|r 206 GAGGMQ--TYRPYILKEFMRITKKYDTLLIADEVMTGWGRTGKIFACNHADI------------TPDILCLS--KGITGG 269 (423)
Q Consensus 206 ~~gG~~--~~~~~~l~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~gi------------~PDi~~~g--K~l~gG 269 (423)
T Consensus 146 SN~~i~GFt~~v~-~~el~~la~~~~ip~i~D-----lG-SG~l~d~~~~gl~~Ep~v~~~l~~GaDlV~FSGDKLL-GG 217 (367)
T pfam03841 146 SNYRIQGFTKEVS-LAELVALGKEHGLPVYYD-----LG-SGSLVDLSQYGLPKEPTVQELLALGVDLVSFSGDKLL-GG 217 (367)
T ss_pred CCCEECCCCCCCC-HHHHHHHHHHCCCCEEEE-----CC-CCCEECCCCCCCCCCCCHHHHHHCCCCEEEEECCCCC-CC
T ss_conf 6512237467799-999999998769967997-----58-6631122001799999899999739988998676456-89
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHCCCCC-CCCC-------------CCCHHHHHH
Q ss_conf 23444332240132100012222222233333222210011000000000112-3322-------------210026789
Q gi|254780488|r 270 ALPLAATLCSEEIFDSHLSSDKKKTFFHSSSYTANPIACAAALANLQIWEKEP-VIER-------------IKNLERMHA 335 (423)
Q Consensus 270 ~~pisav~~~~~i~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~~~-l~~~-------------~~~~g~~l~ 335 (423)
T Consensus 218 -PQAGII~Gkk~lI~~ikkn----PL--~RAlRvDKltLaaLeatL~~Yl~~~~~~~~IP~l~mL~~~~~~L~~rA~~l~ 290 (367)
T pfam03841 218 -PQAGIIVGKKELIERLKKN----PL--KRALRVDKLTLAALEATLRLYLNPEKLYEKIPTLRLLTQPLKELRAKAERLQ 290 (367)
T ss_pred -CCCCEEEECHHHHHHHHHC----CH--HHHHCCCHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHCCCHHHHHHHHHHHH
T ss_conf -8532476459999974647----44--4544458899999999999984900000116589986399999999999999
Q ss_pred HHHHHHHH-CCC--EEE---ECCCCCE-------EEEEECCCCCCCCCHHHHHHHHHHHHC--CEEEEECCCEEEE
Q ss_conf 89999751-897--777---7455339-------999970687666410689999999978--8599951998995
Q gi|254780488|r 336 DRLSLLKS-NKK--FVN---IRQMGTI-------VALDFNVQNKGYFFDKNAKLKNFFREK--KILIRPLGHIMYL 396 (423)
Q Consensus 336 ~~l~~L~~-~~~--v~~---vrG~Gl~-------~~iel~~~~~~~~~~~~~~l~~~l~~~--Gil~~~~gn~i~l 396 (423)
T Consensus 291 ~~l~~~~~~~~~~~v~~~~s~vGgGslP~~~lpS~al~i~~~~~-----~~~~l~~~LR~~~~PIIgRI~~~~~~L 361 (367)
T pfam03841 291 KLLKARLGSGAEVSVEPSFSQIGGGSLPVKELPSAAVTIRPENM-----ALDALKLRLRLLDPPIIGRIEDDALWL 361 (367)
T ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCC-----CHHHHHHHHHCCCCCEEEEEECCEEEE
T ss_conf 99767516882599997777437887877768877999857989-----999999997379998899998998999