HHsearch alignment for GI: 254780488 and conserved domain: pfam05889

>pfam05889 SLA_LP_auto_ag Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). This family consists of several eukaryotic and archaeal proteins which are related to the human soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway. Some archaeal members are annotated as being pyridoxal phosphate-dependent enzymes.
Probab=97.27  E-value=0.0018  Score=43.59  Aligned_cols=204  Identities=13%  Similarity=0.241  Sum_probs=106.7

Q ss_pred             CCCCHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECCCC---CCC---------CCCCCCCCC
Q ss_conf             11110122127751134311655432112222333211001101112342000122---124---------444555431
Q gi|254780488|r  181 KTLDDLEKHCSTQKIAAFLVEPLILGAGGMQTYRPYILKEFMRITKKYDTLLIADE---VMT---------GWGRTGKIF  248 (423)
Q Consensus       181 ~~l~~l~~~~~~~~iaavi~EP~i~~~gG~~~~~~~~l~~lr~lc~~~g~llI~DE---V~t---------G~GRtG~~~  248 (423)
T Consensus       142 ~~ie~~i~~~g~~~ilcVlsTTS-----cFaPR~pD~v~~IAklC~~~~IpHvVNnAYGlQ~~~~~~~i~~a~-r~GRV-  214 (389)
T pfam05889       142 NDVETIIEEKGEEVILAVLSTTS-----CFAPRSPDNVKEIAKICAEYDVPHLVNGAYGIQSEETIRLIAAAH-ECGRV-  214 (389)
T ss_pred             HHHHHHHHHHCCCCEEEEEECCC-----CCCCCCCCCHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHH-HCCCC-
T ss_conf             99999999838776689984466-----569999667999999999749974784303661799999999998-63882-


Q ss_pred             CCCCCCCCCCEE--ECCCCCCCCCCCCCCCC-C--CHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHCC----
Q ss_conf             122334444202--01344332223444332-2--40132100012222222233333222210011000000000----
Q gi|254780488|r  249 ACNHADITPDIL--CLSKGITGGALPLAATL-C--SEEIFDSHLSSDKKKTFFHSSSYTANPIACAAALANLQIWE----  319 (423)
Q Consensus       249 a~~~~gi~PDi~--~~gK~l~gG~~pisav~-~--~~~i~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~----  319 (423)
T Consensus       215 ---------Da~VQStDKNf---lVPVGGaIIas~d~~~i~~i-----------s~~YPGRA----S~sp~lDlfITLLs  267 (389)
T pfam05889       215 ---------DAVVQSLDKNF---IVPVGGAIIAAFDESFIQEI-----------SEEYPGRA----SARPSKDKLITLLS  267 (389)
T ss_pred             ---------EEEEEECCCCE---EEECCCEEEEECCHHHHHHH-----------HHCCCCCC----CCCHHHHHHHHHHH
T ss_conf             ---------18997068662---55348748970888999999-----------84189977----77407999999999


Q ss_pred             --CCC---CCCCCCCHHHHHHHHHHHHHHCCC--EEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCEE---E-E
Q ss_conf             --112---332221002678989999751897--7777455339999970687666410689999999978859---9-9
Q gi|254780488|r  320 --KEP---VIERIKNLERMHADRLSLLKSNKK--FVNIRQMGTIVALDFNVQNKGYFFDKNAKLKNFFREKKIL---I-R  388 (423)
Q Consensus       320 --~~~---l~~~~~~~g~~l~~~l~~L~~~~~--v~~vrG~Gl~~~iel~~~~~~~~~~~~~~l~~~l~~~Gil---~-~  388 (423)
T Consensus       268 lG~~gy~~Ll~eRke~~~~l~e~L~~~a~~~ge~lL~t~~N~IS~aitl~~l~~~~-~~~~t~lgs~Lf~r~VsG~RvV~  346 (389)
T pfam05889       268 LGCKAYLALMKEQKEMFPLLRELLKDLAEEVGEQLLDVPHNPISSAMTLETLDEIS-KKGRTDLGSELFSRRVTGARVVR  346 (389)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCEEEEEECCCCCCCC-CCCHHHHHHHHHHCCCCCCEEEC
T ss_conf             74888999999999999999999999999829875138999516888734556667-55499999999756787651665


Q ss_pred             ECC--CE----------EEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             519--98----------99568987879999999999999998
Q gi|254780488|r  389 PLG--HI----------MYLMPPYCITATDLDHIYNTINEAVD  419 (423)
Q Consensus       389 ~~g--n~----------i~l~Ppl~it~~eId~~l~~l~~aL~  419 (423)
T Consensus       347 ~~~~~~~~~~~~y~~~Ylt~aaaiG~~~~dVd~f~~rL~k~l~  389 (389)
T pfam05889       347 SSDPFGTIEGCEYHGRYLNIASAIGMKDEDVDYVIERLDEILE  389 (389)
T ss_pred             CCCCCCEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_conf             6888534616768836789998708868999999999998529