HHsearch alignment for GI: 254780488 and conserved domain: pfam05889
>pfam05889 SLA_LP_auto_ag Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). This family consists of several eukaryotic and archaeal proteins which are related to the human soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway. Some archaeal members are annotated as being pyridoxal phosphate-dependent enzymes.
Probab=97.27 E-value=0.0018 Score=43.59 Aligned_cols=204 Identities=13% Similarity=0.241 Sum_probs=106.7
Q ss_pred CCCCHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECCCC---CCC---------CCCCCCCCC
Q ss_conf 11110122127751134311655432112222333211001101112342000122---124---------444555431
Q gi|254780488|r 181 KTLDDLEKHCSTQKIAAFLVEPLILGAGGMQTYRPYILKEFMRITKKYDTLLIADE---VMT---------GWGRTGKIF 248 (423)
Q Consensus 181 ~~l~~l~~~~~~~~iaavi~EP~i~~~gG~~~~~~~~l~~lr~lc~~~g~llI~DE---V~t---------G~GRtG~~~ 248 (423)
T Consensus 142 ~~ie~~i~~~g~~~ilcVlsTTS-----cFaPR~pD~v~~IAklC~~~~IpHvVNnAYGlQ~~~~~~~i~~a~-r~GRV- 214 (389)
T pfam05889 142 NDVETIIEEKGEEVILAVLSTTS-----CFAPRSPDNVKEIAKICAEYDVPHLVNGAYGIQSEETIRLIAAAH-ECGRV- 214 (389)
T ss_pred HHHHHHHHHHCCCCEEEEEECCC-----CCCCCCCCCHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHH-HCCCC-
T ss_conf 99999999838776689984466-----569999667999999999749974784303661799999999998-63882-
Q ss_pred CCCCCCCCCCEE--ECCCCCCCCCCCCCCCC-C--CHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHCC----
Q ss_conf 122334444202--01344332223444332-2--40132100012222222233333222210011000000000----
Q gi|254780488|r 249 ACNHADITPDIL--CLSKGITGGALPLAATL-C--SEEIFDSHLSSDKKKTFFHSSSYTANPIACAAALANLQIWE---- 319 (423)
Q Consensus 249 a~~~~gi~PDi~--~~gK~l~gG~~pisav~-~--~~~i~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~---- 319 (423)
T Consensus 215 ---------Da~VQStDKNf---lVPVGGaIIas~d~~~i~~i-----------s~~YPGRA----S~sp~lDlfITLLs 267 (389)
T pfam05889 215 ---------DAVVQSLDKNF---IVPVGGAIIAAFDESFIQEI-----------SEEYPGRA----SARPSKDKLITLLS 267 (389)
T ss_pred ---------EEEEEECCCCE---EEECCCEEEEECCHHHHHHH-----------HHCCCCCC----CCCHHHHHHHHHHH
T ss_conf ---------18997068662---55348748970888999999-----------84189977----77407999999999
Q ss_pred --CCC---CCCCCCCHHHHHHHHHHHHHHCCC--EEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCEE---E-E
Q ss_conf --112---332221002678989999751897--7777455339999970687666410689999999978859---9-9
Q gi|254780488|r 320 --KEP---VIERIKNLERMHADRLSLLKSNKK--FVNIRQMGTIVALDFNVQNKGYFFDKNAKLKNFFREKKIL---I-R 388 (423)
Q Consensus 320 --~~~---l~~~~~~~g~~l~~~l~~L~~~~~--v~~vrG~Gl~~~iel~~~~~~~~~~~~~~l~~~l~~~Gil---~-~ 388 (423)
T Consensus 268 lG~~gy~~Ll~eRke~~~~l~e~L~~~a~~~ge~lL~t~~N~IS~aitl~~l~~~~-~~~~t~lgs~Lf~r~VsG~RvV~ 346 (389)
T pfam05889 268 LGCKAYLALMKEQKEMFPLLRELLKDLAEEVGEQLLDVPHNPISSAMTLETLDEIS-KKGRTDLGSELFSRRVTGARVVR 346 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCEEEEEECCCCCCCC-CCCHHHHHHHHHHCCCCCCEEEC
T ss_conf 74888999999999999999999999999829875138999516888734556667-55499999999756787651665
Q ss_pred ECC--CE----------EEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 519--98----------99568987879999999999999998
Q gi|254780488|r 389 PLG--HI----------MYLMPPYCITATDLDHIYNTINEAVD 419 (423)
Q Consensus 389 ~~g--n~----------i~l~Ppl~it~~eId~~l~~l~~aL~ 419 (423)
T Consensus 347 ~~~~~~~~~~~~y~~~Ylt~aaaiG~~~~dVd~f~~rL~k~l~ 389 (389)
T pfam05889 347 SSDPFGTIEGCEYHGRYLNIASAIGMKDEDVDYVIERLDEILE 389 (389)
T ss_pred CCCCCCEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_conf 6888534616768836789998708868999999999998529