BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780488|ref|YP_003064901.1| adenosylmethionine--8-amino-7-oxononanoate transaminase [Candidatus Liberibacter asiaticus str. psy62] (423 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780488|ref|YP_003064901.1| adenosylmethionine--8-amino-7-oxononanoate transaminase [Candidatus Liberibacter asiaticus str. psy62] Length = 423 Score = 884 bits (2285), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/423 (100%), Positives = 423/423 (100%) Query: 1 MNHLHSNYPIWHPFVQHFCNPTFKKIIKTEGSYLIDENHDKIIDAISSWWVITHGHRHPI 60 MNHLHSNYPIWHPFVQHFCNPTFKKIIKTEGSYLIDENHDKIIDAISSWWVITHGHRHPI Sbjct: 1 MNHLHSNYPIWHPFVQHFCNPTFKKIIKTEGSYLIDENHDKIIDAISSWWVITHGHRHPI 60 Query: 61 IMNAIRSASENYDQIIFSEYTHEPAEQLARLLIKIAPLGLQYVFFSDSGSTSIEVALKMA 120 IMNAIRSASENYDQIIFSEYTHEPAEQLARLLIKIAPLGLQYVFFSDSGSTSIEVALKMA Sbjct: 61 IMNAIRSASENYDQIIFSEYTHEPAEQLARLLIKIAPLGLQYVFFSDSGSTSIEVALKMA 120 Query: 121 LGFFNNNNMPRNKIVVMEHGYHGDTIGSMSVSMRGAFNNSYEPLLFDVETIPFPHHNEEQ 180 LGFFNNNNMPRNKIVVMEHGYHGDTIGSMSVSMRGAFNNSYEPLLFDVETIPFPHHNEEQ Sbjct: 121 LGFFNNNNMPRNKIVVMEHGYHGDTIGSMSVSMRGAFNNSYEPLLFDVETIPFPHHNEEQ 180 Query: 181 KTLDDLEKHCSTQKIAAFLVEPLILGAGGMQTYRPYILKEFMRITKKYDTLLIADEVMTG 240 KTLDDLEKHCSTQKIAAFLVEPLILGAGGMQTYRPYILKEFMRITKKYDTLLIADEVMTG Sbjct: 181 KTLDDLEKHCSTQKIAAFLVEPLILGAGGMQTYRPYILKEFMRITKKYDTLLIADEVMTG 240 Query: 241 WGRTGKIFACNHADITPDILCLSKGITGGALPLAATLCSEEIFDSHLSSDKKKTFFHSSS 300 WGRTGKIFACNHADITPDILCLSKGITGGALPLAATLCSEEIFDSHLSSDKKKTFFHSSS Sbjct: 241 WGRTGKIFACNHADITPDILCLSKGITGGALPLAATLCSEEIFDSHLSSDKKKTFFHSSS 300 Query: 301 YTANPIACAAALANLQIWEKEPVIERIKNLERMHADRLSLLKSNKKFVNIRQMGTIVALD 360 YTANPIACAAALANLQIWEKEPVIERIKNLERMHADRLSLLKSNKKFVNIRQMGTIVALD Sbjct: 301 YTANPIACAAALANLQIWEKEPVIERIKNLERMHADRLSLLKSNKKFVNIRQMGTIVALD 360 Query: 361 FNVQNKGYFFDKNAKLKNFFREKKILIRPLGHIMYLMPPYCITATDLDHIYNTINEAVDF 420 FNVQNKGYFFDKNAKLKNFFREKKILIRPLGHIMYLMPPYCITATDLDHIYNTINEAVDF Sbjct: 361 FNVQNKGYFFDKNAKLKNFFREKKILIRPLGHIMYLMPPYCITATDLDHIYNTINEAVDF 420 Query: 421 LEL 423 LEL Sbjct: 421 LEL 423 >gi|254780432|ref|YP_003064845.1| acetylornithine transaminase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 392 Score = 136 bits (342), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 109/384 (28%), Positives = 183/384 (47%), Gaps = 31/384 (8%) Query: 28 KTEGSYLIDENHDKIIDAISSWWVITHGHRHPIIMNAIRSASENYDQIIFSEYTHEPAEQ 87 K +G++L EN +D S V + GH HP ++ ++S SE + + Y E Sbjct: 20 KGKGAWLFSENGIPFLDFASGIAVNSLGHSHPELVAILKSQSEKLWHVS-NLYQSTQQEI 78 Query: 88 LARLLIKIAPLGLQYVFFSDSGSTSIEVALKMALGF-FNNNNMPRNKIVVMEHGYHGDTI 146 A LI VFF++SG+ S+E A+K A + + + +IV E +HG T+ Sbjct: 79 FANHLIH--STFADRVFFTNSGAESVECAIKTARRYHYMAGKTNKFRIVTFEGAFHGRTL 136 Query: 147 GSMSVSMRGAFNNSYEPLLFDVETIPFPHHNEEQKTLDDLEKHCSTQKIAAFLVEPLILG 206 ++S + + + P + + F L L+ S AA L+EP I G Sbjct: 137 ATISAGGKLQYLEGFGPKIEGFDQAKFCD-------LQSLKNQISNDT-AAILIEP-IQG 187 Query: 207 AGGMQTYRPYILKEFMRITKKYDTLLIADEVMTGWGRTGKIFACNHADITPDILCLSKGI 266 GG++ L++ +I D LLI DEV TG+GRTGK+FA A++ PDI+ ++KG+ Sbjct: 188 EGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLFAYEWANVKPDIMTIAKGM 247 Query: 267 TGGALPLAATLCSEEIFDSHLSSDKKKTFFHSSSYTANPIACAAALANLQIWEKEPVIER 326 GG P+ A L + E+ H S+Y N +A L I + + +E Sbjct: 248 -GGGFPIGACLATNEVAACMNQGS------HGSTYGGNVLAMVLGEKVLNIIQSDGFLEN 300 Query: 327 IKNLERMHADRLSLLKSN--KKFVNIRQMGTIVALDFNVQNKGYFFDKNAKLKNFFREKK 384 + N+ ++ + L+ +K+ F+ +R G ++ L K F A L FR++ Sbjct: 301 VINIAKILFEGLTAIKNRFPNMFLEVRGQGLLIGL------KTVF--SPALLAAKFRDEC 352 Query: 385 ILIRPLG-HIMYLMPPYCITATDL 407 +L P +++ ++PP ITA ++ Sbjct: 353 LLTAPSSDNVVRILPPLTITAEEI 376 >gi|254780813|ref|YP_003065226.1| Maf-like protein [Candidatus Liberibacter asiaticus str. psy62] Length = 199 Score = 26.2 bits (56), Expect = 1.1, Method: Compositional matrix adjust. Identities = 11/43 (25%), Positives = 22/43 (51%) Query: 8 YPIWHPFVQHFCNPTFKKIIKTEGSYLIDENHDKIIDAISSWW 50 Y + F++ + N KK + + GSY ID+ ++ +I + Sbjct: 135 YKLSEEFIKFYLNKIGKKALLSVGSYQIDKEGIQLFSSIKGSY 177 >gi|254781091|ref|YP_003065504.1| putative pyridoxal-phosphate-dependent aminotransferase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 383 Score = 25.0 bits (53), Expect = 2.5, Method: Compositional matrix adjust. Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 5/66 (7%) Query: 218 LKEFMRITKKYDTLLIADEVMTGWGRTGKIFACNHADITPDILCLSKGITGGALPLAATL 277 +KE +I K+Y +L+ D V G+I + +I D L +S G + A + Sbjct: 163 IKEIAQIVKEYQGILVVDAVQA----AGRI-PLSIEEIKADFLIISSHKLGAPVGAGALV 217 Query: 278 CSEEIF 283 E+I Sbjct: 218 FREDIL 223 >gi|254781079|ref|YP_003065492.1| diguanylate cyclase [Candidatus Liberibacter asiaticus str. psy62] Length = 266 Score = 24.6 bits (52), Expect = 3.0, Method: Compositional matrix adjust. Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 17/124 (13%) Query: 93 IKIAPL-GLQYVFFSDSGSTSIEVALKMALGFFNNNNMPR-----NKIVVMEH--GYHGD 144 I + P GL+Y+ + I + + + LG+ + + + N+I + G Sbjct: 53 IGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGL 112 Query: 145 TIGSMSVSMRGAFNNSYEPLLFDVETIPFPHHNEEQKTLDDLEKHCSTQKIAAFLVEPLI 204 S +S G++N + FD++ K ++D H K+ AFL + L+ Sbjct: 113 LNHSAFISSLGSYNEKLSIVFFDIDYF---------KQINDNFGHPVGDKVIAFLSDQLV 163 Query: 205 LGAG 208 + G Sbjct: 164 VVFG 167 >gi|254780947|ref|YP_003065360.1| transcription-repair coupling factor [Candidatus Liberibacter asiaticus str. psy62] Length = 1187 Score = 24.3 bits (51), Expect = 3.7, Method: Compositional matrix adjust. Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%) Query: 120 ALGFFNNNNMPRNKIVV-MEHGYHGDTIGSMSVSMRGAFNNSYE 162 A FF+++N+ I+V EHG G + S+ + G F++ E Sbjct: 494 AQSFFDSSNIEEGAIIVHAEHGI-GRFVRLYSIEVSGTFHDCLE 536 >gi|254780456|ref|YP_003064869.1| 30S ribosomal protein S1 [Candidatus Liberibacter asiaticus str. psy62] Length = 576 Score = 23.9 bits (50), Expect = 4.7, Method: Compositional matrix adjust. Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Query: 178 EEQKTLDDLEKHCSTQKIAAFLVEPLILGAGGMQTYRPYILKEFMRITKKYDTLLIADEV 237 EE T DL ++C T+ I L + ++ G++ +EFM +Y + + DEV Sbjct: 16 EESFTKKDLAENCVTKGIVVGLEKDTVVVDVGLKFEGRIPRREFMG-KGQYTPIKVGDEV 74 Query: 238 MTGWGRTGKIFA 249 RT F Sbjct: 75 EVYVERTENSFG 86 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.322 0.137 0.419 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 285,076 Number of Sequences: 1233 Number of extensions: 11858 Number of successful extensions: 27 Number of sequences better than 100.0: 7 Number of HSP's better than 100.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 22 Number of HSP's gapped (non-prelim): 7 length of query: 423 length of database: 328,796 effective HSP length: 76 effective length of query: 347 effective length of database: 235,088 effective search space: 81575536 effective search space used: 81575536 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 40 (20.0 bits)