HHsearch alignment for GI: 254780489 and conserved domain: PRK08304
>PRK08304 stage V sporulation protein AD; Validated.
Probab=99.16 E-value=1.1e-09 Score=83.14 Aligned_cols=274 Identities=20% Similarity=0.263 Sum_probs=158.5
Q ss_pred CCCEEEEEEEEECCCCCCCHHHHHHHHCCCHHHEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEE
Q ss_conf 66209999997358861388899988099976831114750889948988799999999999864301322234425884
Q gi|254780489|r 3 KSSSCILGFGHAVPNQCIHNSIIERHLNLKLGVIEQKTGIKYRYWAEKHETLTDIAIQAGDIALRNANIKKDSISLTLLA 82 (325)
Q Consensus 3 ~~~~~I~g~g~~lP~~~i~n~~l~~~~~~~~~~i~~~tGI~~R~~~~~~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~ 82 (325)
T Consensus 13 ~~~p~I~s~~svvGpkE-geGPL~~~FD~i~~D--~~~g--~~s---wEkAE~~m~~~A~~~al~Ka~l~~~dId~~~aG 84 (336)
T PRK08304 13 ENPPYIISTGTIVGPKE-GEGPLGKYFDKIYDD--DYCG--EKS---WEKAESKLMSDAIQQALQKANLKESDIDYLLAG 84 (336)
T ss_pred CCCCEEEEEEEEECCCC-CCCCCHHHCCEEECC--CCCC--CCC---HHHHHHHHHHHHHHHHHHHCCCCHHHCEEEEEC
T ss_conf 79988999657866746-668774427735115--4457--142---999999999999999999749997787389722
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC-CCEEEEEEECCCC---CCCC----CC-CC
Q ss_conf 31002368874322112100238633342101231012567657887438-8505886201224---4446----22-24
Q gi|254780489|r 83 TSTPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLYALVMADSYINSH-QKPVLIIAANLLS---RRIN----LE-DK 153 (325)
Q Consensus 83 s~t~d~~~P~~a~~v~~~Lg~~~~~~~di~~~C~g~l~aL~~A~~~i~~g-~~~vLVv~~e~~S---~~~d----~~-d~ 153 (325)
T Consensus 85 DLl-nQ~i--~s~f~ar~l~IP---f~GlyGACST~~Esl~laa~~vdgg~A~~vla~tSSH~~tAErQFR~P~EyG~Qr 158 (336)
T PRK08304 85 DLL-NQTI--SANFVARELGIP---FLGLYGACSTMMESLALASMLIDGGFADRVLAATSSHFATAERQFRFPTEYGGQR 158 (336)
T ss_pred HHH-HHHH--HHHHHHHHCCCC---EEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHEECCCCCHHHHHHCCCCHHCCCCC
T ss_conf 245-5467--766779865998---0102567788999999999998266364531002334203665515803206779
Q ss_pred -CCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHH
Q ss_conf -4343254420011220576544453113553213677652783069866765445565523224514543432010036
Q gi|254780489|r 154 -DTAIIFGDAAGAVVLAPSPLKDKSGILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQ 232 (325)
Q Consensus 154 -~~~~lfGDgA~A~il~~~~~~~~~~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~ 232 (325)
T Consensus 159 p~tAqwTVTGaGa~il~~~~~--~p~It~~TiG---------kVvD~Gi~D~~nM-----------GaA----MAPAA~d 212 (336)
T PRK08304 159 PPTAQWTVTGAGAVLLSKEGS--GPKITYATIG---------KVIDYGIKDPLDM-----------GAA----MAPAAAD 212 (336)
T ss_pred CCCCCEEEECEEEEEEECCCC--CCEEEEEEEE---------EEEECCCCCCCCC-----------HHH----HHHHHHH
T ss_conf 986517887517999813899--9779898678---------8876488884303-----------555----5378999
Q ss_pred HHHHHHHHHCCCCCCCCEEEECC---CCCHHHHHHHHHCCCCHHHHHH-----HHH----HC--CC---CCCCHHHHH-H
Q ss_conf 78988997401200122463056---5413899999971978657002-----185----40--93---300059999-9
Q gi|254780489|r 233 SAKQSLRKSDLQPQDINRFIPHQ---ANSRIIQKVCEKIGLSKRIMVN-----SLK----DF--GN---SSSASIPLS-L 294 (325)
Q Consensus 233 ~i~~~l~~~gl~~~did~~i~Hq---~~~~~~~~~~~~lgi~~~~~~~-----~l~----~~--GN---~~sAsi~~~-L 294 (325)
T Consensus 213 TI~~hf~Dtg~~p~dYDlIvTGDLg~vG~~i~~~Ll~e~g~~i~~~~~DCG~~iyd~e~Qdv~aGGSGcgCSAvV~~g~i 292 (336)
T PRK08304 213 TIKQHFEDTGRTPEDYDLIVTGDLGAVGREIAKELLKEEGYDISDNYNDCGVMIYDSEQQDVFAGGSGCACSAVVTYGYL 292 (336)
T ss_pred HHHHHHHHHCCCHHHCCEEEECCHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 99999998099900234899664588789999999998097855522756768763777765688765444789989998
Q ss_pred HHHHHHCCCCCCCEEEEEEECCCCC
Q ss_conf 9999806789998999998615510
Q gi|254780489|r 295 SLENQRKPFQKGEKILTISCRRGND 319 (325)
Q Consensus 295 ~~~~~~g~i~~Gd~vll~~~G~G~s 319 (325)
T Consensus 293 l~~m~~g~~k---rvL~vaTGALlS 314 (336)
T PRK08304 293 YKELQKGKLK---RVLVVATGALLS 314 (336)
T ss_pred HHHHHCCCCC---EEEEEECCHHCC
T ss_conf 9998648731---799997403138