HHsearch alignment for GI: 254780489 and conserved domain: cd00826

>cd00826 nondecarbox_cond_enzymes nondecarboxylating condensing enzymes; In general, thiolases catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=99.54  E-value=2.1e-13  Score=107.50  Aligned_cols=96  Identities=17%  Similarity=0.128  Sum_probs=78.1

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             8879999999999986430132223442588431002368874322112-100238633342101231012567657887
Q gi|254780489|r   51 HETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITH-RLGLMQSGAIDLTGACAGFLYALVMADSYI  129 (325)
Q Consensus        51 ~e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~-~Lg~~~~~~~di~~~C~g~l~aL~~A~~~i  129 (325)
T Consensus        20 ~~~a~eL~~~ai~~al~~agi~~~~Id~vi~G~~~~~g~g~n~ar~~~l~ag~~~~vp~~tV~~~CaSG~~Ai~~A~~~I   99 (393)
T cd00826          20 NDLAHEAGAKAIAAALEPAGVAAGAVEEACLGQVLGAGEGQNCAQQAAMHAGGLQEAPAIGMNNLCGSGLRALALAMQLI   99 (393)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCHHHCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf             89999999999999999829698998989999258755554199999997599989976887684789999999999999


Q ss_pred             HCC-CCEEEEEEECCCCC
Q ss_conf             438-85058862012244
Q gi|254780489|r  130 NSH-QKPVLIIAANLLSR  146 (325)
Q Consensus       130 ~~g-~~~vLVv~~e~~S~  146 (325)
T Consensus       100 ~sG~~dvvlagGvEsms~  117 (393)
T cd00826         100 AGGDANCILAGGFEKMET  117 (393)
T ss_pred             HCCCCCEEEEEEEEECCC
T ss_conf             769999899950550676