HHsearch alignment for GI: 254780489 and conserved domain: cd00828
>cd00828 elong_cond_enzymes "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases.They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues.
Probab=99.40 E-value=1.7e-11 Score=94.97 Aligned_cols=240 Identities=20% Similarity=0.182 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCC------CCCEEEEEEEEEC-----------------CCC------C-CCCCCCCCCCCC
Q ss_conf 999999999998643013222------3442588431002-----------------368------8-743221121002
Q gi|254780489|r 54 LTDIAIQAGDIALRNANIKKD------SISLTLLATSTPD-----------------HLL------P-PSSPLITHRLGL 103 (325)
Q Consensus 54 ~~~la~~Aa~~aL~~a~~~~~------dId~ii~~s~t~d-----------------~~~------P-~~a~~v~~~Lg~ 103 (325)
T Consensus 72 ~~~~~l~aa~~Al~dAGl~~~~~~~~~r~g-v~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~ 150 (407)
T cd00828 72 TTLLALVATEEALADAGITDPYEVHPSEVG-VVVGSGMGGLRFLRRGGKLDARAVNPYVSPKWMLSPNTVAGWVNILLLS 150 (407)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHCCCCCEE-EEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHCC
T ss_conf 999999999999996799964552787669-9999677438889988776554058732502301422488999998587
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHCCC-CEEEEEEECCCCCC---------------------CCCCC-CCCCCCCC
Q ss_conf 386333421012310125676578874388-50588620122444---------------------46222-44343254
Q gi|254780489|r 104 MQSGAIDLTGACAGFLYALVMADSYINSHQ-KPVLIIAANLLSRR---------------------INLED-KDTAIIFG 160 (325)
Q Consensus 104 ~~~~~~di~~~C~g~l~aL~~A~~~i~~g~-~~vLVv~~e~~S~~---------------------~d~~d-~~~~~lfG 160 (325)
T Consensus 151 ~~Gp~~tv~tACaSsl~Ai~~A~~~I~~G~~d~aivGg~~~~~~~~~~~f~~~~~ls~~~~~p~~~~rPFD~~rdG~v~g 230 (407)
T cd00828 151 SHGPIKTPVGACATALEALDLAVEAIRSGKADIVVVGGVEDPLEEGLSGFANMGALSTAEEEPEEMSRPFDETRDGFVEA 230 (407)
T ss_pred CCCCCCCEECHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEC
T ss_conf 88985265035079999999996662368514466431223563667999874454227899887513036678986834
Q ss_pred CCEEEEEECCCCCCCCC--CCEEEE----EEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHH
Q ss_conf 42001122057654445--311355----321367765278306986676544556552322451454343201003678
Q gi|254780489|r 161 DAAGAVVLAPSPLKDKS--GILGIE----LTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSA 234 (325)
Q Consensus 161 DgA~A~il~~~~~~~~~--~il~~~----~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i 234 (325)
T Consensus 231 EGa~~lvLe~~~~A~~rg~~i~a~i~g~~~~~dg~~--------------------~~--~~~~~--------~~~~~~~ 280 (407)
T cd00828 231 EGAGVLVLERAELALARGAPIYGRVAGTASTTDGAG--------------------RS--VPAGG--------KGIARAI 280 (407)
T ss_pred CCCEEEEEEEHHHHHHCCCEEEEEECCEEEECCCCC--------------------CC--CCCCC--------HHHHHHH
T ss_conf 852177650486676688979996436478668988--------------------87--79862--------6789999
Q ss_pred HHHHHHHCCCCCCCCEEEECCCCCHH-----HHHHHHHCCCCHHHHH--HHHHHCCCCCCCHHHHHHHHH---HHHCCCC
Q ss_conf 98899740120012246305654138-----9999997197865700--218540933000599999999---9806789
Q gi|254780489|r 235 KQSLRKSDLQPQDINRFIPHQANSRI-----IQKVCEKIGLSKRIMV--NSLKDFGNSSSASIPLSLSLE---NQRKPFQ 304 (325)
Q Consensus 235 ~~~l~~~gl~~~did~~i~Hq~~~~~-----~~~~~~~lgi~~~~~~--~~l~~~GN~~sAsi~~~L~~~---~~~g~i~ 304 (325)
T Consensus 281 ~~Al~~A~i~~~~i~yI~aHgtgT~~gD~~E~~Al~~~f~~~~~~~~i~S~K~~~GH~~~aaG~~~li~~~l~l~~~~ip 360 (407)
T cd00828 281 RTALAKAGLSLDDLDVISAHGTSTPANDVAESRAIAEVAGALGAPLPVTAQKALFGHSKGAAGALQLIGALQSLEHGLIP 360 (407)
T ss_pred HHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999719995456389951676866699999999998621378870445012303167899999999999998439719
Q ss_pred C--------------------------CCEEEEEEECCCCCCCCCC
Q ss_conf 9--------------------------9899999861551020101
Q gi|254780489|r 305 K--------------------------GEKILTISCRRGNDRGIYC 324 (325)
Q Consensus 305 ~--------------------------Gd~vll~~~G~G~s~ga~l 324 (325)
T Consensus 361 pt~n~~~~~p~~~~~~~~~~~~~~~~~~~~a~~nsfGfGG~Na~lv 406 (407)
T cd00828 361 PTANLDDVDPDVEHLSVVGLSRDLNLKVRAALVNAFGFGGSNAALV 406 (407)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEE
T ss_conf 9999899997656133777687688999799997835680507896