HHsearch alignment for GI: 254780489 and conserved domain: cd00831
>cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs. PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions.
Probab=100.00 E-value=0 Score=445.44 Aligned_cols=314 Identities=22% Similarity=0.269 Sum_probs=257.4
Q ss_pred CEEEEEEEEECCCCCCCHHHHHHHHCC------------CHHHEEECCCCCEEEEECCC---------------------
Q ss_conf 209999997358861388899988099------------97683111475088994898---------------------
Q gi|254780489|r 5 SSCILGFGHAVPNQCIHNSIIERHLNL------------KLGVIEQKTGIKYRYWAEKH--------------------- 51 (325)
Q Consensus 5 ~~~I~g~g~~lP~~~i~n~~l~~~~~~------------~~~~i~~~tGI~~R~~~~~~--------------------- 51 (325)
T Consensus 1 ~A~I~gigt~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~tgI~~R~~~~~~~~~~~~~~~~~~~~~~~r~~~ 80 (361)
T cd00831 1 AATILAIGTAVPPHRVPQSELVDFYRRLFSSDHLPELKEKLKRLCAKTGIETRYLVLPGGEETYAPRPEMSPSLDERNDI 80 (361)
T ss_pred CEEEEEEEEECCCEEECHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCCCCCCCCCHHHHHHH
T ss_conf 91999988777992675999999998744333435678999999972698615555266122024565558887888777
Q ss_pred --CCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCC-CCCCCCCC-CCCCCCHHHHHHHHH
Q ss_conf --87999999999998643013222344258843100236887432211210023-86333421-012310125676578
Q gi|254780489|r 52 --ETLTDIAIQAGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLM-QSGAIDLT-GACAGFLYALVMADS 127 (325)
Q Consensus 52 --e~~~~la~~Aa~~aL~~a~~~~~dId~ii~~s~t~d~~~P~~a~~v~~~Lg~~-~~~~~di~-~~C~g~l~aL~~A~~ 127 (325)
T Consensus 81 ~~~~~~~la~~Aa~~AL~~ag~~~~dId~lI~~Tst-~~~~Ps~a~~v~~~LGl~~~~~~~dl~~~gCsg~~~aL~~A~~ 159 (361)
T cd00831 81 ALEEARELAEEAARGALDEAGLRPSDIDHLVVNTST-GNPTPSLDAMLINRLGLRPDVKRYNLGGMGCSAGAIALDLAKD 159 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEEECCC-CCCCCCHHHHHHHHHCCCCCHHEEECCCCCCHHHHHHHHHHHH
T ss_conf 998999999999999999819898999999998659-9998976999999738998700355646755689999999999
Q ss_pred HHHCC-CCEEEEEEECCCCCCCCCCCCC----CCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCC
Q ss_conf 87438-8505886201224444622244----343254420011220576544453113553213677652783069866
Q gi|254780489|r 128 YINSH-QKPVLIIAANLLSRRINLEDKD----TAIIFGDAAGAVVLAPSPLKDKSGILGIELTSDGSKYDLIKIPTGGST 202 (325)
Q Consensus 128 ~i~~g-~~~vLVv~~e~~S~~~d~~d~~----~~~lfGDgA~A~il~~~~~~~~~~il~~~~~s~~~~~~~~~~~~~~~~ 202 (325)
T Consensus 160 ~i~~g~~~~vLVV~~E~~S~~~~~~d~~~~~v~~~LFGDGA~A~vl~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~ 235 (361)
T cd00831 160 LLEANPGARVLVVSTELCSLWYRGPDHRSMLVGNALFGDGAAAVLLSNDPRDRRRERPLF--ELVRA--ASTLLPDSEDA 235 (361)
T ss_pred HHHHCCCCEEEEEEEEECCEECCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCEE--EECCC--CCCCCCCCCCC
T ss_conf 998299976999961211202068875777554200047725899842676665666526--88377--76124688876
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHH--CCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHH---H
Q ss_conf 765445565523224514543432010036789889974--01200122463056541389999997197865700---2
Q gi|254780489|r 203 SPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKS--DLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMV---N 277 (325)
Q Consensus 203 ~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~--gl~~~did~~i~Hq~~~~~~~~~~~~lgi~~~~~~---~ 277 (325)
T Consensus 236 ~~~~--~~~~g~~~~l~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~di~~~~~Hq~~~~Ii~~v~~~Lgl~~~~~~~s~~ 313 (361)
T cd00831 236 MGWH--LGEEGLTFVLSRDVPRLVEKNLERVLRKLLARLGIGLFKLAFDHWCVHPGGRAVLDAVEKALGLSPEDLEASRM 313 (361)
T ss_pred CCCC--CCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 6665--05775378506369999999999999999998258999677255887878689999999982989688325787
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 185409330005999999999806789998999998615510201019
Q gi|254780489|r 278 SLKDFGNSSSASIPLSLSLENQRKPFQKGEKILTISCRRGNDRGIYCL 325 (325)
Q Consensus 278 ~l~~~GN~~sAsi~~~L~~~~~~g~i~~Gd~vll~~~G~G~s~ga~lL 325 (325)
T Consensus 314 ~l~~~GNtsSaSip~~L~~~~~~~~~~~Gd~vl~~afG~Glt~~~~v~ 361 (361)
T cd00831 314 VLRRYGNMSSSSVLYVLAYMEAKGRVKRGDRGLLIAFGPGFTCESAVW 361 (361)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHEEEEECC
T ss_conf 898638539889999999999739999999899999810405531209