HHsearch alignment for GI: 254780489 and conserved domain: cd00832
>cd00832 CLF Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria. CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine.
Probab=99.38 E-value=1.1e-11 Score=96.19 Aligned_cols=269 Identities=16% Similarity=0.165 Sum_probs=146.3
Q ss_pred CCEEEEEEEEECCCCCCCHHHHHHHH-CCCHH--HEEE---------C----CCCCEEEEEC-----CCCCHHHHHHHHH
Q ss_conf 62099999973588613888999880-99976--8311---------1----4750889948-----9887999999999
Q gi|254780489|r 4 SSSCILGFGHAVPNQCIHNSIIERHL-NLKLG--VIEQ---------K----TGIKYRYWAE-----KHETLTDIAIQAG 62 (325)
Q Consensus 4 ~~~~I~g~g~~lP~~~i~n~~l~~~~-~~~~~--~i~~---------~----tGI~~R~~~~-----~~e~~~~la~~Aa 62 (325)
T Consensus 1 rRVvItG~g~~~P~g~-~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~v~~f~~~~~~~~~~~~~~d~~~~~~l~aa 79 (399)
T cd00832 1 RRAVVTGIGVVAPNGL-GVEEYWKAVLDGRSGLGPITRFDPSGYPARLAGEVPDFDAAEHLPGRLLPQTDRMTRLALAAA 79 (399)
T ss_pred CCEEEECCEEECCCCC-CHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEECCCCCHHHCCCHHHHHHCCHHHHHHHHHH
T ss_conf 9299971677897959-999999999729983542775575568776456779878011689889874699999999999
Q ss_pred HHHHHHCCCCCCCCCE----EEEEEEEECC-----------------CCCC---------CCCCCCCCCCCCCCCCCCCC
Q ss_conf 9986430132223442----5884310023-----------------6887---------43221121002386333421
Q gi|254780489|r 63 DIALRNANIKKDSISL----TLLATSTPDH-----------------LLPP---------SSPLITHRLGLMQSGAIDLT 112 (325)
Q Consensus 63 ~~aL~~a~~~~~dId~----ii~~s~t~d~-----------------~~P~---------~a~~v~~~Lg~~~~~~~di~ 112 (325)
T Consensus 80 ~~Al~dAGl~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~gl~G-p~~tv~ 158 (399)
T cd00832 80 DWALADAGVDPAALPPYDMGVVTASAAGGFEFGQRELQKLWSKGPRHVSAYQSFAWFYAVNTGQISIRHGMRG-PSGVVV 158 (399)
T ss_pred HHHHHHCCCCHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-CCCCHH
T ss_conf 9988860998456487742899942567602558999999741854256112135667788889999828988-741021
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEEECCC---------------CCCCC------CCC-CCCCCCCCCCEEEEEECC
Q ss_conf 01231012567657887438850588620122---------------44446------222-443432544200112205
Q gi|254780489|r 113 GACAGFLYALVMADSYINSHQKPVLIIAANLL---------------SRRIN------LED-KDTAIIFGDAAGAVVLAP 170 (325)
Q Consensus 113 ~~C~g~l~aL~~A~~~i~~g~~~vLVv~~e~~---------------S~~~d------~~d-~~~~~lfGDgA~A~il~~ 170 (325)
T Consensus 159 tacsssl~Ai~~A~~~i~~G~d~~i~Gg~~~~l~p~~~~~~~~~g~ls~~~~p~~~~rPFD~~r~G~v~GEGa~~lvLe~ 238 (399)
T cd00832 159 AEQAGGLDALAQARRLVRRGTPLVVSGGVDSALCPWGWVAQLSSGRLSTSDDPARAYLPFDAAAAGYVPGEGGAILVLED 238 (399)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHCCCCCEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCEEEEEECC
T ss_conf 14707999999999998769720121774045162889999875664569999865047767898066427667888454
Q ss_pred CCCCCC--CCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 765444--531135532136776527830698667654455655232245145434320100367898899740120012
Q gi|254780489|r 171 SPLKDK--SGILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRKSDLQPQDI 248 (325)
Q Consensus 171 ~~~~~~--~~il~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~~di 248 (325)
T Consensus 239 ~~~A~~rGa~i~a~i~G-~~~~~d~------~~~-------------~~~~--------~~~~~a~~~Al~~agi~p~~I 290 (399)
T cd00832 239 AAAARERGARVYGEIAG-YAATFDP------PPG-------------SGRP--------PGLARAIRLALADAGLTPEDV 290 (399)
T ss_pred HHHHHHCCCEEEEEEEE-EEECCCC------CCC-------------CCCH--------HHHHHHHHHHHHHHCCCCCEE
T ss_conf 98898788959999988-8984899------899-------------9897--------999999999999719996705
Q ss_pred CEEEECCCCCHH-----HHHHHHHCCCCHHHHH--HHHHHCCCCCCCHHHHHHHH---HHHHCCCC
Q ss_conf 246305654138-----9999997197865700--21854093300059999999---99806789
Q gi|254780489|r 249 NRFIPHQANSRI-----IQKVCEKIGLSKRIMV--NSLKDFGNSSSASIPLSLSL---ENQRKPFQ 304 (325)
Q Consensus 249 d~~i~Hq~~~~~-----~~~~~~~lgi~~~~~~--~~l~~~GN~~sAsi~~~L~~---~~~~g~i~ 304 (325)
T Consensus 291 ~yI~aHgTGT~~gD~~E~~Ai~~~fg--~~~~pv~S~K~~iGH~~~AaG~~~~i~~ll~l~~g~ip 354 (399)
T cd00832 291 DVVFADAAGVPELDRAEAAALAAVFG--PRGVPVTAPKTMTGRLYAGGAPLDVATALLALRDGVIP 354 (399)
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 69998337585569999999999966--99987899542211069999999999999998359619