HHsearch alignment for GI: 254780489 and conserved domain: pfam00109
>pfam00109 ketoacyl-synt Beta-ketoacyl synthase, N-terminal domain. The structure of beta-ketoacyl synthase is similar to that of the thiolase family (pfam00108) and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. The N-terminal domain contains most of the structures involved in dimer formation and also the active site cysteine.
Probab=98.69 E-value=4.8e-08 Score=72.42 Aligned_cols=164 Identities=22% Similarity=0.262 Sum_probs=99.8
Q ss_pred CCEEEEEEEEECCCCCCCHHHHHHHH--CCCHHHEEEC----CC--CCEEE-------EECCC------------CCHHH
Q ss_conf 62099999973588613888999880--9997683111----47--50889-------94898------------87999
Q gi|254780489|r 4 SSSCILGFGHAVPNQCIHNSIIERHL--NLKLGVIEQK----TG--IKYRY-------WAEKH------------ETLTD 56 (325)
Q Consensus 4 ~~~~I~g~g~~lP~~~i~n~~l~~~~--~~~~~~i~~~----tG--I~~R~-------~~~~~------------e~~~~ 56 (325)
T Consensus 2 ~~VvITG~G~vtp~G-~~~~~~w~~L~~G~s-~-i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~ 78 (243)
T pfam00109 2 EPVAITGMGCRFPGG-VGPEEFWELLLAGRD-A-IREFPADLSGLYPPSRVAGEIYGFDFDAAFFGISPREAEAMDPQQR 78 (243)
T ss_pred CCEEEECCEEECCCC-CCHHHHHHHHHCCCC-E-EEECCCHHHHCCCCCCCCEECCCCCCCHHHCCCCHHHHHHCCHHHH
T ss_conf 999998668899798-999999999985998-8-8746950644479876010146778781115989999985499999
Q ss_pred HHHHHHHHHHHHCCCCCCCCC-----EEEEEEEEEC----------------------CCCCC-CCCCCCCCCCCCCCCC
Q ss_conf 999999998643013222344-----2588431002----------------------36887-4322112100238633
Q gi|254780489|r 57 IAIQAGDIALRNANIKKDSIS-----LTLLATSTPD----------------------HLLPP-SSPLITHRLGLMQSGA 108 (325)
Q Consensus 57 la~~Aa~~aL~~a~~~~~dId-----~ii~~s~t~d----------------------~~~P~-~a~~v~~~Lg~~~~~~ 108 (325)
T Consensus 79 ~~~~aa~~Al~dAGl~~~~~~~~~~~gv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~~g~~G-p~ 157 (243)
T pfam00109 79 LALEAAWEALEDAGLDPASLRGSDRTGVFVGSGSGDYAELQALDSAGGPRRGSPYLTGAWMPSVAAGRISYRLGLRG-PS 157 (243)
T ss_pred HHHHHHHHHHHHCCCCHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCCEEECCCCCCHHHHHHHHHHCCCC-CC
T ss_conf 99999999999849984672788728999986476489999763036743346411056451178889986741579-86
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCC-CCEEEEEEECC-CCC----------C-------CCCCCC-CCCCCCCCCEEEEEE
Q ss_conf 342101231012567657887438-85058862012-244----------4-------462224-434325442001122
Q gi|254780489|r 109 IDLTGACAGFLYALVMADSYINSH-QKPVLIIAANL-LSR----------R-------INLEDK-DTAIIFGDAAGAVVL 168 (325)
Q Consensus 109 ~di~~~C~g~l~aL~~A~~~i~~g-~~~vLVv~~e~-~S~----------~-------~d~~d~-~~~~lfGDgA~A~il 168 (325)
T Consensus 158 ~t~~~ACaSg~~AI~~A~~~I~~G~~d~~i~Gg~~~~~~~~~~~~f~~~~a~~~~~~~~rpfd~~~~G~v~GEGaa~lvL 237 (243)
T pfam00109 158 VTVDTACSSSLVALHAAVRSIRRGECDLALAGGVEAPLTPGGFAGFSAAGALLSPDGPCKAFDPFADGFVRGEGVGAVLL 237 (243)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEE
T ss_conf 46655207899999999975336983879997841556978999999747857979998887899996553614998999
Q ss_pred CCC
Q ss_conf 057
Q gi|254780489|r 169 APS 171 (325)
Q Consensus 169 ~~~ 171 (325)
T Consensus 238 E~~ 240 (243)
T pfam00109 238 KEL 240 (243)
T ss_pred EEH
T ss_conf 767