HHsearch alignment for GI: 254780489 and conserved domain: pfam00109

>pfam00109 ketoacyl-synt Beta-ketoacyl synthase, N-terminal domain. The structure of beta-ketoacyl synthase is similar to that of the thiolase family (pfam00108) and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. The N-terminal domain contains most of the structures involved in dimer formation and also the active site cysteine.
Probab=98.69  E-value=4.8e-08  Score=72.42  Aligned_cols=164  Identities=22%  Similarity=0.262  Sum_probs=99.8

Q ss_pred             CCEEEEEEEEECCCCCCCHHHHHHHH--CCCHHHEEEC----CC--CCEEE-------EECCC------------CCHHH
Q ss_conf             62099999973588613888999880--9997683111----47--50889-------94898------------87999
Q gi|254780489|r    4 SSSCILGFGHAVPNQCIHNSIIERHL--NLKLGVIEQK----TG--IKYRY-------WAEKH------------ETLTD   56 (325)
Q Consensus         4 ~~~~I~g~g~~lP~~~i~n~~l~~~~--~~~~~~i~~~----tG--I~~R~-------~~~~~------------e~~~~   56 (325)
T Consensus         2 ~~VvITG~G~vtp~G-~~~~~~w~~L~~G~s-~-i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~   78 (243)
T pfam00109         2 EPVAITGMGCRFPGG-VGPEEFWELLLAGRD-A-IREFPADLSGLYPPSRVAGEIYGFDFDAAFFGISPREAEAMDPQQR   78 (243)
T ss_pred             CCEEEECCEEECCCC-CCHHHHHHHHHCCCC-E-EEECCCHHHHCCCCCCCCEECCCCCCCHHHCCCCHHHHHHCCHHHH
T ss_conf             999998668899798-999999999985998-8-8746950644479876010146778781115989999985499999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCC-----EEEEEEEEEC----------------------CCCCC-CCCCCCCCCCCCCCCC
Q ss_conf             999999998643013222344-----2588431002----------------------36887-4322112100238633
Q gi|254780489|r   57 IAIQAGDIALRNANIKKDSIS-----LTLLATSTPD----------------------HLLPP-SSPLITHRLGLMQSGA  108 (325)
Q Consensus        57 la~~Aa~~aL~~a~~~~~dId-----~ii~~s~t~d----------------------~~~P~-~a~~v~~~Lg~~~~~~  108 (325)
T Consensus        79 ~~~~aa~~Al~dAGl~~~~~~~~~~~gv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~~g~~G-p~  157 (243)
T pfam00109        79 LALEAAWEALEDAGLDPASLRGSDRTGVFVGSGSGDYAELQALDSAGGPRRGSPYLTGAWMPSVAAGRISYRLGLRG-PS  157 (243)
T ss_pred             HHHHHHHHHHHHCCCCHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCCEEECCCCCCHHHHHHHHHHCCCC-CC
T ss_conf             99999999999849984672788728999986476489999763036743346411056451178889986741579-86


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHCC-CCEEEEEEECC-CCC----------C-------CCCCCC-CCCCCCCCCEEEEEE
Q ss_conf             342101231012567657887438-85058862012-244----------4-------462224-434325442001122
Q gi|254780489|r  109 IDLTGACAGFLYALVMADSYINSH-QKPVLIIAANL-LSR----------R-------INLEDK-DTAIIFGDAAGAVVL  168 (325)
Q Consensus       109 ~di~~~C~g~l~aL~~A~~~i~~g-~~~vLVv~~e~-~S~----------~-------~d~~d~-~~~~lfGDgA~A~il  168 (325)
T Consensus       158 ~t~~~ACaSg~~AI~~A~~~I~~G~~d~~i~Gg~~~~~~~~~~~~f~~~~a~~~~~~~~rpfd~~~~G~v~GEGaa~lvL  237 (243)
T pfam00109       158 VTVDTACSSSLVALHAAVRSIRRGECDLALAGGVEAPLTPGGFAGFSAAGALLSPDGPCKAFDPFADGFVRGEGVGAVLL  237 (243)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEE
T ss_conf             46655207899999999975336983879997841556978999999747857979998887899996553614998999


Q ss_pred             CCC
Q ss_conf             057
Q gi|254780489|r  169 APS  171 (325)
Q Consensus       169 ~~~  171 (325)
T Consensus       238 E~~  240 (243)
T pfam00109       238 KEL  240 (243)
T ss_pred             EEH
T ss_conf             767