BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780489|ref|YP_003064902.1| 3-oxoacyl-(acyl carrier
protein) synthase II [Candidatus Liberibacter asiaticus str. psy62]
(325 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780489|ref|YP_003064902.1| 3-oxoacyl-(acyl carrier protein) synthase II [Candidatus
Liberibacter asiaticus str. psy62]
Length = 325
Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/325 (100%), Positives = 325/325 (100%)
Query: 1 MIKSSSCILGFGHAVPNQCIHNSIIERHLNLKLGVIEQKTGIKYRYWAEKHETLTDIAIQ 60
MIKSSSCILGFGHAVPNQCIHNSIIERHLNLKLGVIEQKTGIKYRYWAEKHETLTDIAIQ
Sbjct: 1 MIKSSSCILGFGHAVPNQCIHNSIIERHLNLKLGVIEQKTGIKYRYWAEKHETLTDIAIQ 60
Query: 61 AGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLY 120
AGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLY
Sbjct: 61 AGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLY 120
Query: 121 ALVMADSYINSHQKPVLIIAANLLSRRINLEDKDTAIIFGDAAGAVVLAPSPLKDKSGIL 180
ALVMADSYINSHQKPVLIIAANLLSRRINLEDKDTAIIFGDAAGAVVLAPSPLKDKSGIL
Sbjct: 121 ALVMADSYINSHQKPVLIIAANLLSRRINLEDKDTAIIFGDAAGAVVLAPSPLKDKSGIL 180
Query: 181 GIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRK 240
GIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRK
Sbjct: 181 GIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAKQSLRK 240
Query: 241 SDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNSLKDFGNSSSASIPLSLSLENQR 300
SDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNSLKDFGNSSSASIPLSLSLENQR
Sbjct: 241 SDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNSLKDFGNSSSASIPLSLSLENQR 300
Query: 301 KPFQKGEKILTISCRRGNDRGIYCL 325
KPFQKGEKILTISCRRGNDRGIYCL
Sbjct: 301 KPFQKGEKILTISCRRGNDRGIYCL 325
>gi|254780497|ref|YP_003064910.1| 3-oxoacyl-(acyl carrier protein) synthase III [Candidatus
Liberibacter asiaticus str. psy62]
Length = 324
Score = 172 bits (436), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 105/315 (33%), Positives = 175/315 (55%), Gaps = 13/315 (4%)
Query: 1 MIKSSSCILGFGHAVPNQCIHNSIIERHLNLKLGVIEQKTGIKYRYWAEKHETLTDIAIQ 60
MI+S+ + G G ++P + + NS +E ++ G I+++ GI R+ A K ET +
Sbjct: 1 MIRST--VRGIGLSLPRRVLSNSDLESIVDTSDGWIKRRVGISRRHIAGKDETTASLGEA 58
Query: 61 AGDIALRNANIKKDSISLTLLATSTPDHLLPPSSPLITHRLGLMQSGAIDLTGACAGFLY 120
A AL +A + D I L ++ATSTPD P ++ I +RLG+ + A D+ C+GF+Y
Sbjct: 59 AARDALHHAEMSVDDIDLIIVATSTPDQTFPSTAVNIQNRLGMKRGFAFDMQAVCSGFVY 118
Query: 121 ALVMADSYINSH-QKPVLIIAANLLSRRINLEDKDTAIIFGDAAGAVVLAPSPLKDKS-- 177
A+ ADSYI S + V++I ++ SR ++ D+ T ++FGD AGA++L +K S
Sbjct: 119 AVTTADSYIRSGVVRRVMVIGSDTFSRIVDWSDRSTCVLFGDGAGALILEGVEVKGSSMA 178
Query: 178 --GILGIELTSDGSKYDLIKIPTGGSTSPAGTNTHDFYMRITNGADIFYNAVKIMAQSAK 235
GIL L SDGS D + + G STS G +F AV+ + +
Sbjct: 179 DTGILSTYLCSDGSYIDKLYVDGGPSTSRTVGCIR------MEGKAVFKYAVEKAVELIE 232
Query: 236 QSLRKSDLQPQDINRFIPHQANSRIIQKVCEKIGLSKRIMVNSLKDFGNSSSASIPLSLS 295
+ + L ++I+ F+PHQAN RII + +K+ + ++ ++ GN+S+ASIPL+L+
Sbjct: 233 KVFDSTHLTIENIDWFVPHQANWRIINSIVDKMKIPFDKVIVTVDIHGNTSAASIPLALA 292
Query: 296 LENQRKPFQKGEKIL 310
+ + +KG+ +L
Sbjct: 293 VAVKEGRVKKGDCLL 307
>gi|254780377|ref|YP_003064790.1| flagellar basal body P-ring biosynthesis protein FlgA [Candidatus
Liberibacter asiaticus str. psy62]
Length = 152
Score = 25.8 bits (55), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 19/74 (25%)
Query: 51 HETLTDIAIQAGDI---------ALRNANIK-------KDSISLTLLATSTPDHLLPPSS 94
H + + I AG++ + N+NI+ KD + L PDH++P S
Sbjct: 27 HAVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLS- 85
Query: 95 PLITHRLGLMQSGA 108
+ HR ++ GA
Sbjct: 86 --VLHRPYVISRGA 97
>gi|254780397|ref|YP_003064810.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 343
Score = 24.6 bits (52), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 42 IKYRYWAEKHETLTDIAIQAGDIALRNANIKKDSISLTLLAT 83
I + WA + T I GD+ + NA K+ ++S+ L T
Sbjct: 21 ISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYET 62
>gi|254781128|ref|YP_003065541.1| hypothetical protein CLIBASIA_05150 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 225
Score = 24.6 bits (52), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 123 VMADSYINSHQKPVLIIAANLLSRRINLEDKDTAIIFGDAAG--AVVLAPSPLKDKSGIL 180
V AD HQ PV + +L I L+ +D +++G + G L P D +
Sbjct: 58 VAADFSKIDHQSPVRLQNLSLNGVSIGLDGQDGTLVYGASLGVEGFHLEPRGGIDGDKVA 117
Query: 181 GIELTSDGSKYD 192
G L G +D
Sbjct: 118 GTLLFRTGFTFD 129
>gi|254780767|ref|YP_003065180.1| lipid-A-disaccharide synthase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 383
Score = 23.1 bits (48), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 77 SLTLLATSTPDHLLPPSSPLITHRLG 102
++ L+ +S PD LL +P THR+
Sbjct: 80 TVELIVSSKPDVLLIVDNPDFTHRVA 105
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.319 0.135 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 203,149
Number of Sequences: 1233
Number of extensions: 8272
Number of successful extensions: 31
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 6
length of query: 325
length of database: 328,796
effective HSP length: 74
effective length of query: 251
effective length of database: 237,554
effective search space: 59626054
effective search space used: 59626054
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 38 (19.2 bits)