HHsearch alignment for GI: 254780490 and conserved domain: COG4974

>COG4974 XerD Site-specific recombinase XerD [DNA replication, recombination, and repair].
Probab=99.91  E-value=5e-25  Score=149.63  Aligned_cols=59  Identities=58%  Similarity=0.957  Sum_probs=57.4

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCHHH
Q ss_conf             21603638999999998089999999984888889999998639999999999958211
Q gi|254780490|r    2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI   60 (67)
Q Consensus         2 ~~tpH~lRHt~at~l~~~G~~~~~vq~lLGH~~i~tT~~Y~~~~~~~~~~~~~~~~p~~   60 (67)
T Consensus       242 ~isPH~LRHsFATHLL~~GADlRvVQeLLGHadisTTQIYTHV~~e~L~~~~~~~HPra  300 (300)
T COG4974         242 KISPHTLRHSFATHLLENGADLRVVQELLGHADISTTQIYTHVTKERLRDLYAQHHPRA  300 (300)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             86813657889999986785399999984866501557879988999999999738999