HHsearch alignment for GI: 254780490 and conserved domain: PRK09692
>PRK09692 integrase; Provisional.
Probab=97.88 E-value=2.5e-05 Score=48.23 Aligned_cols=58 Identities=17% Similarity=0.162 Sum_probs=43.9
Q ss_pred CCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHH-HHHHHHHCCH-HHHHHHHHHHCHHH
Q ss_conf 1603638999999998089999999984888889-9999986399-99999999958211
Q gi|254780490|r 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNS-KRMMEIYDQTHPSI 60 (67)
Q Consensus 3 ~tpH~lRHt~at~l~~~G~~~~~vq~lLGH~~i~-tT~~Y~~~~~-~~~~~~~~~~~p~~ 60 (67)
T Consensus 334 ~t~Hd~RrT~~T~l~e~g~~~~viE~~L~H~~~~~v~~~Ynr~~yl~eRr~~mq~Wadyl 393 (413)
T PRK09692 334 LVSHGLRSIASTALNEQGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADFV 393 (413)
T ss_pred EECCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_conf 658484577999899769999999998689999828999567759999999999999999