HHsearch alignment for GI: 254780490 and conserved domain: PRK09692

>PRK09692 integrase; Provisional.
Probab=97.88  E-value=2.5e-05  Score=48.23  Aligned_cols=58  Identities=17%  Similarity=0.162  Sum_probs=43.9

Q ss_pred             CCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHH-HHHHHHHCCH-HHHHHHHHHHCHHH
Q ss_conf             1603638999999998089999999984888889-9999986399-99999999958211
Q gi|254780490|r    3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNS-KRMMEIYDQTHPSI   60 (67)
Q Consensus         3 ~tpH~lRHt~at~l~~~G~~~~~vq~lLGH~~i~-tT~~Y~~~~~-~~~~~~~~~~~p~~   60 (67)
T Consensus       334 ~t~Hd~RrT~~T~l~e~g~~~~viE~~L~H~~~~~v~~~Ynr~~yl~eRr~~mq~Wadyl  393 (413)
T PRK09692        334 LVSHGLRSIASTALNEQGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADFV  393 (413)
T ss_pred             EECCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_conf             658484577999899769999999998689999828999567759999999999999999