HHsearch alignment for GI: 254780490 and conserved domain: TIGR02249
>TIGR02249 integrase_gron integron integrase; InterPro: IPR011946 Members of this family are integrases associated with integrons (and super-integrons), which are systems for incorporating and expressing cassettes of laterally transferred DNA. Incorporation occurs at an attI site. A super-integron, as in Vibrio sp., may include over 100 cassettes. This family belongs to the phage integrase family that also includes recombinases XerC (IPR011931 from INTERPRO) and XerD (IPR011932 from INTERPRO), which are bacterial housekeeping proteins. Within this family of integron integrases, some are designated by class, e.g. IntI4, a class 4 integron integrase from Vibrio cholerae N16961.; GO: 0003677 DNA binding, 0006310 DNA recombination, 0015074 DNA integration.
Probab=99.88 E-value=4.2e-24 Score=144.83 Aligned_cols=46 Identities=61% Similarity=0.963 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHCCHH
Q ss_conf 2160363899999999808999999998488888999999863999
Q gi|254780490|r 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 (67)
Q Consensus 2 ~~tpH~lRHt~at~l~~~G~~~~~vq~lLGH~~i~tT~~Y~~~~~~ 47 (67)
T Consensus 263 pvTcHTLRHSFATHLLe~G~DIRTVQelLGHsDVkTTqIYTHVL~r 308 (320)
T TIGR02249 263 PVTCHTLRHSFATHLLESGADIRTVQELLGHSDVKTTQIYTHVLNR 308 (320)
T ss_pred CCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEECC
T ss_conf 6788742122443056517736789886178842246345305145