HHsearch alignment for GI: 254780490 and conserved domain: cd00799
>cd00799 INT_Cre Cre recombinase, C-terminal catalytic domain. Cre-like recombinases belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The bacteriophage P1 Cre recombinase maintains the circular phage replicon in a monomeric state by catalyzing a site-specific recombination between two loxP sites. The catalytic core domain of Cre recombinase is linked to a more divergent helical N-terminal domain, which interacts primarily with the DNA major groove proximal to the crossover region.
Probab=99.63 E-value=2.8e-16 Score=104.57 Aligned_cols=52 Identities=21% Similarity=0.133 Sum_probs=47.1
Q ss_pred CCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHH
Q ss_conf 2160363899999999808999999998488888999999863999999999
Q gi|254780490|r 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 (67)
Q Consensus 2 ~~tpH~lRHt~at~l~~~G~~~~~vq~lLGH~~i~tT~~Y~~~~~~~~~~~~ 53 (67)
T Consensus 233 ~~s~H~lRHt~At~ll~~G~~l~~Iq~~lGH~s~~tt~~Y~~~~d~~~~~~~ 284 (287)
T cd00799 233 SWSGHSLRRGFATEAARAGYSLLEIMRQGRWRSPKMVSRYIRDADRFQGNAV 284 (287)
T ss_pred CCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCCHHCCCHH
T ss_conf 9897513899999999879999999998589998899998537131013244