HHsearch alignment for GI: 254780490 and conserved domain: cd01185

>cd01185 INT_Tn4399 Tn4399 and related integrases, DNA breaking-rejoining enzymes, integrase/recombinases, N- and C-terminal domains. This CD includes various bacterial integrases, including cLV25, a Bacteroides fragilis chromosomal transfer factor integrase similar to the Bacteroides mobilizable transposon, Tn4399, integrase.
Probab=99.84  E-value=1.8e-21  Score=131.26  Aligned_cols=54  Identities=35%  Similarity=0.616  Sum_probs=52.6

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             216036389999999980899999999848888899999986399999999999
Q gi|254780490|r    2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ   55 (67)
Q Consensus         2 ~~tpH~lRHt~at~l~~~G~~~~~vq~lLGH~~i~tT~~Y~~~~~~~~~~~~~~   55 (67)
T Consensus       245 ~it~H~lRHTfAt~ll~~G~~l~~vq~~LGHssi~tT~~Y~hv~~e~~~e~~~k  298 (299)
T cd01185         245 HITFHCARHTFATLQLLSGGPIETVSKMLGHTNIKTTQVYARVTDEKKSEDMNK  298 (299)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHC
T ss_conf             998114099999999987989999998818998899999987798899999963