HHsearch alignment for GI: 254780490 and conserved domain: cd01186
>cd01186 INT_SG3_C INT_SG3, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 3, catalytic domain. The CD contains various predicted bacterial and phage integrase/recombinase sequences for which not much experimental characterization is available.
Probab=99.79 E-value=1.6e-19 Score=121.33 Aligned_cols=56 Identities=25% Similarity=0.390 Sum_probs=54.2
Q ss_pred CCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHC
Q ss_conf 21603638999999998089999999984888889999998639999999999958
Q gi|254780490|r 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 (67)
Q Consensus 2 ~~tpH~lRHt~at~l~~~G~~~~~vq~lLGH~~i~tT~~Y~~~~~~~~~~~~~~~~ 57 (67)
T Consensus 124 ~~~~H~lRHT~at~l~~~G~~l~~iq~~LGH~si~tT~~Y~~~~~e~~~k~~~~~~ 179 (180)
T cd01186 124 NIGTHTLRKTFGYHYYKQTKDIALLMEIFNHSSPAITLRYIGINQDEIDKQLDNFK 179 (180)
T ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf 76676017899999999699999999993899989999985899999999997378