HHsearch alignment for GI: 254780490 and conserved domain: cd01190

>cd01190 INT_SG5 INT_SG5, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 5, N- and C-terminal domains. The CD contains mainly predicted bacterial integrase/recombinases.

Probab=99.88  E-value=4.9e-23  Score=139.35  Aligned_cols=57  Identities=35%  Similarity=0.536  Sum_probs=56.0

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCH
Q ss_conf             216036389999999980899999999848888899999986399999999999582
Q gi|254780490|r    2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP   58 (67)
Q Consensus         2 ~~tpH~lRHt~at~l~~~G~~~~~vq~lLGH~~i~tT~~Y~~~~~~~~~~~~~~~~p   58 (67)
T Consensus       204 ~~~~H~lRHt~At~ll~~G~~l~~vq~~LGH~~i~tT~~Y~hv~~~~~r~a~~k~~p  260 (260)
T cd01190         204 RISPHVLRHTTAMHLLQSGVDIVVIALWLGHASLETTNIYAEADLEMKRRALAKATP  260 (260)
T ss_pred             CCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHCC
T ss_conf             767671389999999987999999999868998899999984799999999998691