HHsearch alignment for GI: 254780490 and conserved domain: cd01191
>cd01191 INT_phiCTX_C phiCTX phage and phage-related integrases, site-specific recombinases, DNA breaking-rejoining enzymes, C-terminal catalytic domain. This CD includes various phage and bacterial integrases, including those similar to phage integrases: Bordetella and Pseudomonas phiCTX; E. coli Rac, Qin, and Shiga toxin 2 933W; and Salmonella typhimurium LT2 Gifsy-2 and Fels-1; and a putative pore-forming cytotoxin integrase from Vibrio parahaemolyticus O3:K6.
Probab=99.48 E-value=3.6e-14 Score=93.77 Aligned_cols=42 Identities=24% Similarity=0.441 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHH-HHHHHC
Q ss_conf 160363899999999808999999998488888999-999863
Q gi|254780490|r 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 (67)
Q Consensus 3 ~tpH~lRHt~at~l~~~G~~~~~vq~lLGH~~i~tT-~~Y~~~ 44 (67)
T Consensus 153 ~~~H~lRHT~aT~ll~~G~~~~~v~~~lGHss~~~T~~~Ya~~ 195 (196)
T cd01191 153 RNPYQMRHTFASWMLTAGANPAFIADQMGHKSAEMVFKHYGKW 195 (196)
T ss_pred CCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 7777884799999998798999999996899799999998833