HHsearch alignment for GI: 254780490 and conserved domain: cd01197

>cd01197 INT_FimBE_C FimB and FimE and related proteins, DNA breaking-rejoining enzymes, integrase/recombinases, catalytic domain. This CD includes those proteins similar to E.coli FimE and FimB regulatory proteins and Proteus mirabilis MrpI.
Probab=99.79  E-value=1.1e-19  Score=122.11  Aligned_cols=52  Identities=37%  Similarity=0.620  Sum_probs=49.8

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHH
Q ss_conf             2160363899999999808999999998488888999999863999999999
Q gi|254780490|r    2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY   53 (67)
Q Consensus         2 ~~tpH~lRHt~at~l~~~G~~~~~vq~lLGH~~i~tT~~Y~~~~~~~~~~~~   53 (67)
T Consensus       129 ~~~~H~lRHt~At~l~~~G~~i~~Iq~~LGH~~i~tT~~Yth~~~~~l~~~~  180 (180)
T cd01197         129 KVHPHMLRHACGYALANQGADTRLIQDYLGHRNIRHTVIYTASNAARFLNLW  180 (180)
T ss_pred             CCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHC
T ss_conf             6789877899999999879999999998389987999999967999998629