HHsearch alignment for GI: 254780490 and conserved domain: cd01197
>cd01197 INT_FimBE_C FimB and FimE and related proteins, DNA breaking-rejoining enzymes, integrase/recombinases, catalytic domain. This CD includes those proteins similar to E.coli FimE and FimB regulatory proteins and Proteus mirabilis MrpI.
Probab=99.79 E-value=1.1e-19 Score=122.11 Aligned_cols=52 Identities=37% Similarity=0.620 Sum_probs=49.8
Q ss_pred CCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHH
Q ss_conf 2160363899999999808999999998488888999999863999999999
Q gi|254780490|r 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 (67)
Q Consensus 2 ~~tpH~lRHt~at~l~~~G~~~~~vq~lLGH~~i~tT~~Y~~~~~~~~~~~~ 53 (67)
T Consensus 129 ~~~~H~lRHt~At~l~~~G~~i~~Iq~~LGH~~i~tT~~Yth~~~~~l~~~~ 180 (180)
T cd01197 129 KVHPHMLRHACGYALANQGADTRLIQDYLGHRNIRHTVIYTASNAARFLNLW 180 (180)
T ss_pred CCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHC
T ss_conf 6789877899999999879999999998389987999999967999998629