HHsearch alignment for GI: 254780490 and conserved domain: cd01198
>cd01198 INT_ASSRA_C Archaeal site-specific recombinase A (ASSRA), DNA breaking-rejoining enzymes, integrase/recombinases, C-terminal catalytic domain. Members of this CD are archael in origin. No biochemical characterization is available for the proteins of this subgroup at this point.
Probab=99.91 E-value=4.1e-25 Score=150.07 Aligned_cols=60 Identities=33% Similarity=0.497 Sum_probs=58.2
Q ss_pred CCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCHHHH
Q ss_conf 216036389999999980899999999848888899999986399999999999582113
Q gi|254780490|r 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 (67)
Q Consensus 2 ~~tpH~lRHt~at~l~~~G~~~~~vq~lLGH~~i~tT~~Y~~~~~~~~~~~~~~~~p~~~ 61 (67)
T Consensus 127 ~vtPH~lRHtfAT~Ll~~G~dl~~vq~lLGHssi~tT~~Y~h~~~~~l~e~y~k~~Pr~~ 186 (186)
T cd01198 127 NFTPHCFRHFFTTWLRRRGGDRGVVQELRGDSRDEAIDTYTHIWGDELREAYLKHIPSLG 186 (186)
T ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCC
T ss_conf 758516389999999986999999999948998899999984799999999998588998