HHsearch alignment for GI: 254780490 and conserved domain: pfam00589
>pfam00589 Phage_integrase Phage integrase family. Members of this family cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment. The catalytic site residues in CRE recombinase are Arg-173, His-289, Arg-292 and Tyr-324.
Probab=99.53 E-value=7.9e-15 Score=97.15 Aligned_cols=46 Identities=54% Similarity=0.781 Sum_probs=44.2
Q ss_pred CCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHCCHH
Q ss_conf 2160363899999999808999999998488888999999863999
Q gi|254780490|r 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 (67)
Q Consensus 2 ~~tpH~lRHt~at~l~~~G~~~~~vq~lLGH~~i~tT~~Y~~~~~~ 47 (67)
T Consensus 124 ~~s~Hs~Rht~at~l~~~g~~~~~v~~~lGH~~~~tT~~Y~~~~~~ 169 (170)
T pfam00589 124 DLTPHDLRHTFATHLAENGVPLRVIQKLLGHSSISMTMRYTHVAAE 169 (170)
T ss_pred CCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHCCCCCC
T ss_conf 6787888489999999969999999999689998999982083855