Query gi|254780490|ref|YP_003064903.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 67
No_of_seqs 106 out of 4897
Neff 6.3
Searched_HMMs 23785
Date Mon May 30 12:47:06 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780490.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a3v_A Site-specific recombina 99.7 2.5E-19 1E-23 119.2 0.4 55 2-56 263-317 (320)
2 1a0p_A Site-specific recombina 99.6 1.5E-17 6.4E-22 110.0 -0.6 53 2-54 238-290 (290)
3 1xo0_A Recombinase CRE; CRE re 99.6 1.9E-16 8.1E-21 104.3 2.3 54 2-55 266-319 (324)
4 1aih_A HP1 integrase; DNA inte 99.6 3E-16 1.3E-20 103.3 2.7 60 2-62 109-168 (170)
5 3nkh_A Integrase; alpha-fold, 99.5 6.3E-15 2.7E-19 96.5 5.8 57 2-58 183-240 (244)
6 1z1b_A Integrase; protein-DNA 99.0 1.8E-10 7.5E-15 73.6 4.1 42 2-44 304-345 (356)
7 1z19_A Integrase; protein-DNA 98.8 9.1E-10 3.8E-14 70.0 2.1 42 2-44 231-272 (283)
8 1ae9_A Lambda integrase; DNA r 98.5 1.8E-08 7.5E-13 63.4 1.8 45 2-47 128-172 (179)
9 2v6e_A Protelemorase; hairpin 91.2 0.071 3E-06 29.4 1.8 44 2-45 396-449 (558)
10 1jko_C HIN recombinase, DNA-in 15.7 66 0.0028 14.1 3.7 40 3-45 6-45 (52)
No 1
>2a3v_A Site-specific recombinase INTI4; protein-DNA complex, recombination; HET: DNA; 2.80A {Vibrio cholerae o1 biovar eltor str}
Probab=99.73 E-value=2.5e-19 Score=119.19 Aligned_cols=55 Identities=49% Similarity=0.748 Sum_probs=51.0
Q ss_pred CCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 2160363899999999808999999998488888999999863999999999995
Q gi|254780490|r 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 (67)
Q Consensus 2 ~~tpH~lRHt~at~l~~~G~~~~~vq~lLGH~~i~tT~~Y~~~~~~~~~~~~~~~ 56 (67)
++|||+|||||||.|+++|+|+..||++|||+|++||++|+|+.++.++++++.+
T Consensus 263 ~~s~H~lRHtfaT~ll~~g~~l~~vq~~lGHss~~tT~~Y~hl~~~~~~~~~~~l 317 (320)
T 2a3v_A 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDRGASGVLSPL 317 (320)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCHHHHHHHHTCSSHHHHGGGCC------CCCCCHH
T ss_pred CCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9888777899999999878999999988389988999999827997899997176
No 2
>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1
Probab=99.63 E-value=1.5e-17 Score=109.99 Aligned_cols=53 Identities=55% Similarity=0.879 Sum_probs=50.4
Q ss_pred CCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHH
Q ss_conf 21603638999999998089999999984888889999998639999999999
Q gi|254780490|r 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 (67)
Q Consensus 2 ~~tpH~lRHt~at~l~~~G~~~~~vq~lLGH~~i~tT~~Y~~~~~~~~~~~~~ 54 (67)
++|||+|||||||.++++|+|+..||.+|||+|++||++|++++.+.++++++
T Consensus 238 ~~s~H~lRht~at~l~~~G~~~~~i~~~lGH~s~~tT~~Y~~~~~~~lr~~~~ 290 (290)
T 1a0p_A 238 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQ 290 (290)
T ss_dssp GCCHHHHHHHHHHHHHHHCSSCGGGSSCC--CCCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf 98745177999999998789999999881899889999998789999998629
No 3
>1xo0_A Recombinase CRE; CRE recombinase, holliday junction, recombination,complex (recombinase/DNA), hydrolase, ligase/DNA complex; 2.00A {Enterobacteria phage P1} SCOP: a.60.9.1 d.163.1.1 PDB: 3crx_A* 1kbu_A 1ma7_A 1q3u_A* 1q3v_A* 3mgv_A* 1ouq_A* 1nzb_A* 2crx_A* 1xns_A 5crx_A* 1f44_A* 2hof_A 2hoi_A 4crx_A* 1drg_A 3c29_A* 3c28_A 1crx_A* 1pvr_A ...
Probab=99.59 E-value=1.9e-16 Score=104.32 Aligned_cols=54 Identities=13% Similarity=0.119 Sum_probs=48.4
Q ss_pred CCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 216036389999999980899999999848888899999986399999999999
Q gi|254780490|r 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 (67)
Q Consensus 2 ~~tpH~lRHt~at~l~~~G~~~~~vq~lLGH~~i~tT~~Y~~~~~~~~~~~~~~ 55 (67)
++|||+|||||||.|+++|+|+..||++|||+|++||++|++..+++...+.+.
T Consensus 266 ~~s~H~lRHt~at~l~~~G~~~~~v~~~lGH~s~~tt~~Y~~~~~~~~~~~~~~ 319 (324)
T 1xo0_A 266 AWSGHSARVGAARDMARAGVSIPEIMQAGGWTNVNIVMNYIRNLDSETGAMVRL 319 (324)
T ss_dssp SCCTTHHHHHHHHHHHHTTCCHHHHHHHHTCSSSSSHHHHSTTSGGGCCHHHHH
T ss_pred CCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 778863199999999987899999998828998899999835646889999998
No 4
>1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Haemophilus phage HP1} SCOP: d.163.1.1
Probab=99.58 E-value=3e-16 Score=103.32 Aligned_cols=60 Identities=30% Similarity=0.577 Sum_probs=56.1
Q ss_pred CCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCHHHHH
Q ss_conf 2160363899999999808999999998488888999999863999999999995821133
Q gi|254780490|r 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 (67)
Q Consensus 2 ~~tpH~lRHt~at~l~~~G~~~~~vq~lLGH~~i~tT~~Y~~~~~~~~~~~~~~~~p~~~~ 62 (67)
.++||+|||||||.++++|+|+..||.+|||+++.+|++|++++.+++++++ +++|..+.
T Consensus 109 ~~~~H~lRht~at~l~~~g~~~~~i~~~lGH~s~~~t~~Y~~~~~~~~~~~~-~~~p~~~~ 168 (170)
T 1aih_A 109 GQLTHVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAHFAPSHLESAV-KFNPLSNP 168 (170)
T ss_dssp TCTTTHHHHHHHHHHHHTTCCHHHHHHHHTCSSHHHHGGGGGGSCCCTTHHH-HHSTTTSC
T ss_pred CCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH-HHCCCCCC
T ss_conf 6321301648999999869979999998389989999998877999999999-85867688
No 5
>3nkh_A Integrase; alpha-fold, MRSA protein, structural genomics, PSI-2, protei structure initiative; 2.50A {Staphylococcus aureus subsp}
Probab=99.53 E-value=6.3e-15 Score=96.52 Aligned_cols=57 Identities=30% Similarity=0.470 Sum_probs=52.8
Q ss_pred CCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHH-HHHHHCCHHHHHHHHHHHCH
Q ss_conf 2160363899999999808999999998488888999-99986399999999999582
Q gi|254780490|r 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHP 58 (67)
Q Consensus 2 ~~tpH~lRHt~at~l~~~G~~~~~vq~lLGH~~i~tT-~~Y~~~~~~~~~~~~~~~~p 58 (67)
+++||+|||||||.++++|+|+..||.+|||+|+++| .+|++++++..+++++++..
T Consensus 183 ~~~~H~lRht~at~l~~~g~~~~~i~~~lGH~s~~~t~~~Y~~~~~~~~~~~~~ki~~ 240 (244)
T 3nkh_A 183 EVSSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQ 240 (244)
T ss_dssp CCSHHHHHHHHHHHHHHTTCCHHHHHHHHCSTTHHHHHHHHHHHHHHHHHTHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 4676334899999999869999999998389988999998446799999999999887
No 6
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=99.01 E-value=1.8e-10 Score=73.62 Aligned_cols=42 Identities=24% Similarity=0.279 Sum_probs=37.7
Q ss_pred CCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHC
Q ss_conf 2160363899999999808999999998488888999999863
Q gi|254780490|r 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 (67)
Q Consensus 2 ~~tpH~lRHt~at~l~~~G~~~~~vq~lLGH~~i~tT~~Y~~~ 44 (67)
..|+|+|||+ |+.++++|+|+..|+.+|||++++||++|...
T Consensus 304 ~~t~H~lRh~-a~~l~~~g~~~~~i~~~lGH~~~~~t~~Y~~~ 345 (356)
T 1z1b_A 304 PPTFHELRSL-SARLYEKQISDKFAQHLLGHKSDTMASQYRDD 345 (356)
T ss_dssp CCCTTHHHHH-HHHHHHHHTCHHHHHHHHTCSSHHHHHHHTCC
T ss_pred CCCCCHHHHH-HHHHHHCCCCHHHHHHHHCCCCHHHHHHHCCC
T ss_conf 9975868999-99999869999999988189998999988047
No 7
>1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 2.80A {Enterobacteria phage lambda} PDB: 1p7d_A*
Probab=98.82 E-value=9.1e-10 Score=70.00 Aligned_cols=42 Identities=24% Similarity=0.279 Sum_probs=37.0
Q ss_pred CCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHC
Q ss_conf 2160363899999999808999999998488888999999863
Q gi|254780490|r 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 (67)
Q Consensus 2 ~~tpH~lRHt~at~l~~~G~~~~~vq~lLGH~~i~tT~~Y~~~ 44 (67)
..++|+|||+ |+.++++|+|+..||++|||+++.+|++|.+.
T Consensus 231 ~~~~H~lR~~-~~~l~~~g~~~~~i~~~lGH~~~~~t~~Y~~~ 272 (283)
T 1z19_A 231 PPTFHELRSL-SARLYEKQISDKFAQHLLGHKSDTMASQYRDD 272 (283)
T ss_dssp CCCGGGHHHH-HHHHHHHHTCHHHHHHHHTCSSSCC-------
T ss_pred CCCCCHHHHH-HHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHC
T ss_conf 9972859999-99999869899999998389988999998425
No 8
>1ae9_A Lambda integrase; DNA recombination, site-specific recombination; 1.90A {Enterobacteria phage lambda} SCOP: d.163.1.1
Probab=98.53 E-value=1.8e-08 Score=63.35 Aligned_cols=45 Identities=22% Similarity=0.250 Sum_probs=37.3
Q ss_pred CCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHCCHH
Q ss_conf 2160363899999999808999999998488888999999863999
Q gi|254780490|r 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 (67)
Q Consensus 2 ~~tpH~lRHt~at~l~~~G~~~~~vq~lLGH~~i~tT~~Y~~~~~~ 47 (67)
..++|.+||+++ .++++|+|+..||.+|||+|++||++|.....+
T Consensus 128 ~~~~~~~r~~~~-~~~~~g~~~~~i~~~~GH~s~~~t~~Y~~~~~~ 172 (179)
T 1ae9_A 128 PPTFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMASQFRDDRGR 172 (179)
T ss_dssp CCCTTHHHHHHH-HHHHHHTCHHHHHHHHTC--------CEECSSC
T ss_pred CHHHHHHHHHHH-HHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHH
T ss_conf 014878999999-999959999999998389999999999856677
No 9
>2v6e_A Protelemorase; hairpin telomere, hydrolase, resolvase, protelomerase, DNA distortion; 3.20A {Klebsiella phage PHIKO2}
Probab=91.20 E-value=0.071 Score=29.38 Aligned_cols=44 Identities=20% Similarity=0.200 Sum_probs=35.3
Q ss_pred CCCCCCHHHHHHHHHHH---------HCCCHH-HHHHHHCCCCHHHHHHHHHCC
Q ss_conf 21603638999999998---------089999-999984888889999998639
Q gi|254780490|r 2 STTAHTLRHSFATHLLS---------NGGDLR-SIQSILGHSRLSTTQIYTNVN 45 (67)
Q Consensus 2 ~~tpH~lRHt~at~l~~---------~G~~~~-~vq~lLGH~~i~tT~~Y~~~~ 45 (67)
.+++|++|+-||--.++ ++++.. .++++|||++++|+..|-+.-
T Consensus 396 e~s~~DlRaIYa~IAf~~Ff~~d~r~k~vden~F~k~VLGHedidTq~hY~~fk 449 (558)
T 2v6e_A 396 RRVYKDSRAIYARIAYEMFFRVDPRWKNVDEDVFFMEILGHDDENTQLHYKQFK 449 (558)
T ss_dssp SCCTTHHHHHHHHHHHHHHTTTSGGGTTSCHHHHHHHHHTCSSTTGGGSSCCEE
T ss_pred CEEECCHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHCCCCHHHHHHHHEEE
T ss_conf 330043066887666765435532312687999999985789614444565367
No 10
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=15.68 E-value=66 Score=14.12 Aligned_cols=40 Identities=23% Similarity=0.319 Sum_probs=27.6
Q ss_pred CCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf 1603638999999998089999999984888889999998639
Q gi|254780490|r 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 (67)
Q Consensus 3 ~tpH~lRHt~at~l~~~G~~~~~vq~lLGH~~i~tT~~Y~~~~ 45 (67)
+||....+ |-.|+.+|.++..|.+.+|=+ .+|.-+|.-..
T Consensus 6 Lt~~q~~~--a~~l~~~G~s~~~iA~~~gVs-r~TlYrylp~~ 45 (52)
T 1jko_C 6 INKHEQEQ--ISRLLEKGHPRQQLAIIFGIG-VSTLYRYFPAS 45 (52)
T ss_dssp SCTTHHHH--HHHHHHTTCCHHHHHHTTSCC-HHHHHHHSCTT
T ss_pred CCHHHHHH--HHHHHHCCCCHHHHHHHHCCC-HHHHHHHCCCH
T ss_conf 99999999--999999789899999997979-99999985130
Done!