HHSEARCH alignment of GI: 254780490 and SCOP domain: d1a0pa2

Alignment

Probab=99.55  E-value=1.2e-16  Score=104.21  Aligned_cols=53  Identities=55%  Similarity=0.879  Sum_probs=50.4

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHH
Q ss_conf             21603638999999998089999999984888889999998639999999999
Q gi|254780490|r    2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD   54 (67)
Q Consensus         2 ~~tpH~lRHt~at~l~~~G~~~~~vq~lLGH~~i~tT~~Y~~~~~~~~~~~~~   54 (67)
                      ++|||+|||||||.++++|+|+..|+++|||++++||++|++++.++++++++
T Consensus       130 ~~t~H~~Rht~at~l~~~G~~~~~I~~~lGH~s~~tt~~Y~~~~~e~~re~~~  182 (182)
T d1a0pa2         130 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQ  182 (182)
T ss_dssp             GCCHHHHHHHHHHHHHHHCSSCGGGSSCC--CCCCHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf             83614146589996556499999999995899889999876879999998609

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNA breaking-rejoining enzymes
superfamily: DNA breaking-rejoining enzymes
family: Lambda integrase-like, catalytic core
domain: Recombinase XerD
species: Escherichia coli [TaxId: 562]