RPSBLAST alignment for GI: 254780490 and conserved domain: cd01196
>gnl|CDD|29517 cd01196, INT_VanD, VanD integrase, IntD, and related integrases, DNA breaking-rejoining enzymes, integrase/recombinases, N- and C-terminal domains. This CD includes various bacterial integrases including those similar to IntD, a putative integrase-like protein, a component of the vanD glycopeptide resistance cluster in Enterococcus faecium BM4339. Members of this CD are predominantly bacterial in origin.. Length = 263
Score = 39.6 bits (92), Expect = 2e-04
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
H+ RH FA + L+ DL + ++GH + TT+IY + I D+
Sbjct: 210 HSFRHLFAKNFLAKYNDLALLADLMGHESIETTRIYLRKTATEQQRIVDK 259