RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780490|ref|YP_003064903.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter asiaticus str. psy62] (67 letters) >1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1 Length = 290 Score = 71.4 bits (173), Expect = 4e-14 Identities = 29/50 (58%), Positives = 42/50 (84%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Sbjct: 240 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLH 289 >2a3v_A Site-specific recombinase INTI4; protein-DNA complex, recombination; HET: DNA; 2.80A {Vibrio cholerae o1 biovar eltor str} Length = 320 Score = 69.8 bits (169), Expect = 1e-13 Identities = 27/51 (52%), Positives = 35/51 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT+V + + Sbjct: 265 TCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDRGASGVLS 315 >1xo0_A Recombinase CRE; CRE recombinase, holliday junction, recombination,complex (recombinase/DNA), hydrolase, ligase/DNA complex; 2.00A {Enterobacteria phage P1} SCOP: a.60.9.1 d.163.1.1 PDB: 3crx_A* 1kbu_A 1ma7_A 1q3u_A* 1q3v_A* 2crx_A* 1ouq_A* 1nzb_A* 1xns_A 5crx_A* 1f44_A* 2hof_A 2hoi_A 4crx_A* 1drg_A 3c29_A* 3c28_A 1crx_A* 1pvr_A 1pvq_A ... Length = 324 Score = 63.4 bits (152), Expect = 1e-11 Identities = 7/49 (14%), Positives = 15/49 (30%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + H+ R A + G + I G + ++ Y + Sbjct: 268 SGHSARVGAARDMARAGVSIPEIMQAGGWTNVNIVMNYIRNLDSETGAM 316 >3nkh_A Integrase; alpha-fold, MRSA protein, structural genomics, PSI-2, protei structure initiative; 2.50A {Staphylococcus aureus subsp} Length = 244 Score = 61.8 bits (149), Expect = 4e-11 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 ++H LRHS + L G L++I +GHS TT IY++V + ++ ++ Sbjct: 185 SSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNK 237 >1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3* Length = 356 Score = 54.9 bits (130), Expect = 4e-09 Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H LR + L + Q +LGH + Y + + +I Sbjct: 306 TFHELRS-LSARLYEKQISDKFAQHLLGHKSDTMASQYRDDRGREWDKI 353 >1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 2.80A {Enterobacteria phage lambda} PDB: 1p7d_A* Length = 283 Score = 52.6 bits (124), Expect = 2e-08 Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 1/50 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T H LR + L + Q +LGH + Y + + +I Sbjct: 233 TFHELRS-LSARLYEKQISDKFAQHLLGHKSDTMASQYRDDRGREWDKIE 281 >1ae9_A Lambda integrase; DNA recombination, site-specific recombination; 1.90A {Bacteriophage lambda} SCOP: d.163.1.1 Length = 179 Score = 44.8 bits (104), Expect = 5e-06 Identities = 7/47 (14%), Positives = 15/47 (31%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 S + L + Q +LGH + + + + +I Sbjct: 131 FHELRSLSARLYEKQISDKFAQHLLGHKSDTMASQFRDDRGREWDKI 177 >1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Bacteriophage HP1} SCOP: d.163.1.1 Length = 170 Score = 40.5 bits (93), Expect = 1e-04 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+H + NGG++ ++ ILGHS + T Y + + + +P Sbjct: 111 LTHVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAHFAPSHLESAV-KFNP 164 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 26.8 bits (59), Expect = 1.3 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 9/48 (18%) Query: 12 FATHLLSNGGDLRSIQ-SILGHSRLSTTQIYT-NVNSKRMMEIYDQTH 57 + T +G DLR + SI R+ I V + + + TH Sbjct: 460 YDTF---DGSDLRVLSGSIS--ERI-VDCIIRLPVKWETTTQ-FKATH 500 Score = 25.3 bits (55), Expect = 3.5 Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 33/83 (39%) Query: 10 HSFATHLL-SNGGDLRSIQSIL----------------GH-SRL------STTQIYT--- 42 H+ A LL N L + ++ S L Q+ Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG 161 Query: 43 ---NVNS--KRMMEIYDQTHPSI 60 N + + + ++Y T+ + Sbjct: 162 GQGNTDDYFEELRDLYQ-TYHVL 183 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.314 0.124 0.341 Gapped Lambda K H 0.267 0.0466 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 464,784 Number of extensions: 13572 Number of successful extensions: 52 Number of sequences better than 10.0: 1 Number of HSP's gapped: 50 Number of HSP's successfully gapped: 14 Length of query: 67 Length of database: 5,693,230 Length adjustment: 37 Effective length of query: 30 Effective length of database: 4,796,202 Effective search space: 143886060 Effective search space used: 143886060 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.7 bits)