RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780490|ref|YP_003064903.1| site-specific tyrosine
recombinase XerC [Candidatus Liberibacter asiaticus str. psy62]
         (67 letters)



>d1a0pa2 d.163.1.1 (A:111-292) Recombinase XerD {Escherichia coli
           [TaxId: 562]}
          Length = 182

 Score = 60.5 bits (145), Expect = 4e-11
 Identities = 29/50 (58%), Positives = 42/50 (84%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++
Sbjct: 132 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLH 181


>d1f44a2 d.163.1.1 (A:130-343) Cre recombinase {Bacteriophage P1
           [TaxId: 10678]}
          Length = 214

 Score = 47.2 bits (110), Expect = 4e-07
 Identities = 6/52 (11%), Positives = 17/52 (32%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           ++ + H+ R   A  +   G  +  I    G + ++    +          +
Sbjct: 155 LAWSGHSARVGAARDMARAGVSIPEIMQAGGWTNVNIVMNFIRNLDSETGAM 206


>d1aiha_ d.163.1.1 (A:) Integrase {Bacteriophage HP1 [TaxId: 10690]}
          Length = 170

 Score = 42.4 bits (98), Expect = 9e-06
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             H LRH+FA+H + NGG++  ++ ILGHS +  T  Y +     +     + +P
Sbjct: 111 LTHVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAHFAPSHLESAV-KFNP 164


>d1ae9a_ d.163.1.1 (A:) Integrase (Int) {Bacteriophage lambda
           [TaxId: 10710]}
          Length = 179

 Score = 41.4 bits (95), Expect = 2e-05
 Identities = 7/47 (14%), Positives = 15/47 (31%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
                S +  L       +  Q +LGH   +    + +   +   +I
Sbjct: 131 FHELRSLSARLYEKQISDKFAQHLLGHKSDTMASQFRDDRGREWDKI 177


>d1dnpa1 a.99.1.1 (A:201-469) C-terminal domain of DNA photolyase
          {Escherichia coli [TaxId: 562]}
          Length = 269

 Score = 23.7 bits (50), Expect = 4.7
 Identities = 8/34 (23%), Positives = 11/34 (32%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS 36
            A      F  +        R   ++ G SRLS
Sbjct: 5  KAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 38


>d1j98a_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS
          {Bacillus subtilis [TaxId: 1423]}
          Length = 154

 Score = 23.1 bits (50), Expect = 5.9
 Identities = 6/17 (35%), Positives = 7/17 (41%), Gaps = 1/17 (5%)

Query: 1  MSTTA-HTLRHSFATHL 16
          M     HTL H  A  +
Sbjct: 45 MKPDTIHTLEHLLAFTI 61


>d1j6xa_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS
          {Helicobacter pylori [TaxId: 210]}
          Length = 151

 Score = 23.1 bits (50), Expect = 7.2
 Identities = 5/17 (29%), Positives = 8/17 (47%), Gaps = 1/17 (5%)

Query: 1  MSTTA-HTLRHSFATHL 16
          M   + H+L H  A  +
Sbjct: 49 MDMPSLHSLEHLVAEII 65


>d1u3da1 a.99.1.1 (A:198-497) Cryptochrome C-terminal domain
          {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 300

 Score = 22.6 bits (47), Expect = 9.0
 Identities = 6/34 (17%), Positives = 8/34 (23%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS 36
          +       +F    L      R        S LS
Sbjct: 21 SNGDKALTTFINGPLLEYSKNRRKADSATTSFLS 54


>d1vjea_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS
          {Deinococcus radiodurans [TaxId: 1299]}
          Length = 149

 Score = 22.7 bits (49), Expect = 9.1
 Identities = 6/17 (35%), Positives = 9/17 (52%), Gaps = 1/17 (5%)

Query: 1  MSTTA-HTLRHSFATHL 16
          +   A HTL H  A ++
Sbjct: 44 IDPAAIHTLEHLLAGYM 60


>d1j6wa_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS
          {Haemophilus influenzae [TaxId: 727]}
          Length = 161

 Score = 22.4 bits (48), Expect = 9.8
 Identities = 7/17 (41%), Positives = 9/17 (52%), Gaps = 1/17 (5%)

Query: 1  MSTTA-HTLRHSFATHL 16
          +S    HTL H FA  +
Sbjct: 46 LSPKGIHTLEHLFAGFM 62


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.124    0.341 

Gapped
Lambda     K      H
   0.267   0.0453    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 199,970
Number of extensions: 5768
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 12
Length of query: 67
Length of database: 2,407,596
Length adjustment: 36
Effective length of query: 31
Effective length of database: 1,913,316
Effective search space: 59312796
Effective search space used: 59312796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.6 bits)