HHSEARCH alignment of GI: 254780491 and SCOP domain: d1xhja_

Alignment

Probab=92.36  E-value=0.068  Score=29.03  Aligned_cols=77  Identities=10%  Similarity=0.132  Sum_probs=59.9

Q ss_pred             CCHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCEEEEEEEECHHHCHHHH-HHHHHHHHHHH-CCCCCCCEEEEEEE
Q ss_conf             35899999984141879997623238701013369879999996722220689-99999999985-39853406999970
Q gi|254780491|r    4 ILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQ-SLRSNAQQIIQ-NIPTVKNAVVTLTE   81 (101)
Q Consensus         4 ~~~~~I~~~L~~v~dP~~~~~iv~~g~V~~i~i~~~~v~i~l~l~~~~~~~~~-~l~~~i~~~l~-~i~gv~~v~V~lt~   81 (101)
                      .+.++|.++|.. .-|.+..+   -|-|+=+.+++|.|.+.+.=....|+... .++..+++.|+ .+|++..|.-..+.
T Consensus         7 ~l~~~I~~vLe~-IRP~l~~d---GGdvelv~v~~g~V~v~l~GaC~gC~~s~~Tlk~~Ie~~L~~~vpev~~V~~V~~~   82 (88)
T d1xhja_           7 TMFDQVAEVIER-LRPFLLRD---GGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQVFLE   82 (88)
T ss_dssp             CHHHHHHHHHHH-HHHHHHHH---SCEEEEEECCSSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEEEECC
T ss_pred             HHHHHHHHHHHH-HHHHHHHC---CCCEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf             899999999998-63799857---98379986359989999657878992089999999999999878997569986487


Q ss_pred             CCC
Q ss_conf             789
Q gi|254780491|r   82 NKN   84 (101)
Q Consensus        82 ~~~   84 (101)
                      |..
T Consensus        83 ~~~   85 (88)
T d1xhja_          83 HHH   85 (88)
T ss_dssp             CCC
T ss_pred             CCC
T ss_conf             777

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: Nitrogen fixation protein NifU homolog SE0630
species: Staphylococcus epidermidis [TaxId: 1282]