BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780491|ref|YP_003064904.1| Mrp protein [Candidatus
Liberibacter asiaticus str. psy62]
(101 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780831|ref|YP_003065244.1| hypothetical protein CLIBASIA_03620 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 341
Score = 201 bits (510), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 101/101 (100%), Positives = 101/101 (100%)
Query: 1 MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS 60
MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS
Sbjct: 1 MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS 60
Query: 61 NAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVA 101
NAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVA
Sbjct: 61 NAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVA 101
>gi|254780881|ref|YP_003065294.1| Mrp protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 101
Score = 197 bits (501), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 101/101 (100%), Positives = 101/101 (100%)
Query: 1 MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS 60
MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS
Sbjct: 1 MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS 60
Query: 61 NAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVA 101
NAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVA
Sbjct: 61 NAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVA 101
>gi|254780491|ref|YP_003064904.1| Mrp protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 101
Score = 197 bits (501), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 101/101 (100%), Positives = 101/101 (100%)
Query: 1 MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS 60
MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS
Sbjct: 1 MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS 60
Query: 61 NAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVA 101
NAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVA
Sbjct: 61 NAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVA 101
>gi|254780716|ref|YP_003065129.1| 6-phosphogluconate dehydrogenase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 475
Score = 25.4 bits (54), Expect = 0.21, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 55 LQSLRSNAQQIIQNIPTVKNAVVTLTENKNP 85
L ++ S ++++ + IP+++ VVT TEN P
Sbjct: 389 LLNIPSISEKVKKTIPSLRRIVVTCTENGYP 419
>gi|254780824|ref|YP_003065237.1| hypothetical protein CLIBASIA_03585 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 162
Score = 22.3 bits (46), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 13 LKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLS 44
L V+ IP EKN I + L+ I + + + LS
Sbjct: 8 LTVIPIPNEKNTICLGRHLASILRLGDCLTLS 39
>gi|254781104|ref|YP_003065517.1| hypothetical protein CLIBASIA_05030 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 125
Score = 21.6 bits (44), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 35 FIVHNTVYLSITVPHTIAHQLQS 57
FI+ V SIT+ ++I H+ +
Sbjct: 7 FIILGVVLASITITYSIKHETEG 29
>gi|254780463|ref|YP_003064876.1| putative peptidoglycan binding protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 673
Score = 21.2 bits (43), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Query: 48 PHTIAHQLQSLRSNAQQIIQN---IPT----VKNAVVTLTENKNPPQQRN 90
PH I H L+ + Q I+++ IPT V+ A T T N +++N
Sbjct: 576 PHDIQHMLERVSLIQQGILEDDNTIPTYISAVRRATSTSTMRSNDLKEKN 625
>gi|254781061|ref|YP_003065474.1| putative iron-sulfur cluster assembly protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 428
Score = 20.8 bits (42), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 60 SNAQQIIQNIPTVKNAVVTLTENKNP 85
++ + I++ +PT KN++ TL + P
Sbjct: 56 TDLKNILKVLPTNKNSIATLQKKYKP 81
>gi|254780177|ref|YP_003064590.1| lipoyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Length = 257
Score = 20.0 bits (40), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 5 LKNQIVDSLKVLSIPGEK 22
L+ I+ +LK+L I GE+
Sbjct: 123 LEEVIIRTLKILGIVGER 140
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.316 0.129 0.343
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,815
Number of Sequences: 1233
Number of extensions: 2013
Number of successful extensions: 19
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of query: 101
length of database: 328,796
effective HSP length: 61
effective length of query: 40
effective length of database: 253,583
effective search space: 10143320
effective search space used: 10143320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.2 bits)
S2: 32 (16.9 bits)